Choristoneura fumiferana (eastern spruce budworm): 141429922
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Entry
141429922 CDS
T11020
Symbol
Vps39
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting 39
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04140
Autophagy - animal
cfum04142
Lysosome biogenesis
cfum04145
Phagocytosis
cfum04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
141429922 (Vps39)
04142 Lysosome biogenesis
141429922 (Vps39)
04140 Autophagy - animal
141429922 (Vps39)
04148 Efferocytosis
141429922 (Vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141429922 (Vps39)
Membrane trafficking [BR:
cfum04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
141429922 (Vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
VPS18_solenoid_2nd
Clathrin
TPR_Vps41
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
B129_C2H2-zf
Motif
Other DBs
NCBI-GeneID:
141429922
NCBI-ProteinID:
XP_073946582
LinkDB
All DBs
Position
7:complement(10086111..10107821)
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AA seq
783 aa
AA seq
DB search
MHEAYEVSHLLNLTVQIEAIAAYDGHLILGTRQGHLMMYSLSSNNGNQKYELQLLQYCKG
FSKKPIQQIEVIPEDNLLLCLTDNILTTHDIKGVNFPLMKTFSQTKGASLFSIDNKSQMS
MTGESNSVVRLCVAVRRKLQLYYGKNGEFKQHLFDFNIPDVPKVMAWGTEYICVGFKAEY
TLYDLSSGNPKELFPTSSSRSLEPTVAKYSETCFMLGRDLTSVLVEEAKEIEIRHTVKWQ
AAPIGLVWDEPYLLGLMQDDNVVVQTVEPPLFVQTLPELNKARLMYRCNRGLIFAASVGQ
VWCISSVDINKQIQQLLKDKQFQIAINLTNLNDCPPEDKKQRINSIKMLLALELFDNKQY
AQAMDEFGKLNTDPADVIKLFPELDNKPGGKNGKLKAEDLEKALNALVKYLLELRSRKSS
ASEASGSQDDPSQRNVMQQLELIDITLLKCYLQINDALIAPLLRLNNCRLEEAEKILVAH
GKHSELVILYQTKGQHLKALQLLKEQAKQPDSSLKGYNXDKKYLQQLGAEHVNLIFKFSD
WIIRDYPEEGLKIFTEDKIEVETLPRPKVLDFFLREHETLVVPYLEHVIHTWNDTSSIFH
DALISMYEEKITDKKPANMTEEELQHTKAKLLAFLEKSSSYTPERVILHFPSDSLFEERA
VILEKLGRHEQALAIYVQILVGALSVLPDSVPLARLKTFLESALDNQLSLKRKTQVLKGL
LYAENQQVQELKQFHESKSVIINDYNVCPVCKKRFGNQSAFVRYPNGDIVHYSCRLEQAA
VRQ
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaggcctatgaggtgtcccatctccttaatcttacggtacaaatagaagctatt
gctgcttacgatggccacctcatattagggacacgacaaggtcacctaatgatgtattca
ctgtcctcaaacaatggtaaccagaaatatgaactccaactcctgcagtattgtaaaggc
ttcagtaagaaacccattcaacagattgaagtgataccagaagacaacctgctgctatgt
ctgacagataacattctgacgacacatgacataaaaggtgttaattttccactaatgaaa
actttctctcaaactaaaggggcatccttattttccatagacaataagtcacaaatgtca
atgaccggtgaatcaaactcagtggtccgtctctgtgttgctgtccgaagaaaactgcaa
ttgtattatggaaagaatggagagttcaagcagcatctatttgatttcaacataccagat
gtaccaaaagttatggcatggggtactgagtatatttgtgttggctttaaagctgaatat
accttgtatgatctctcatcaggaaacccgaaagagctgttccccaccagcagctctagg
tctttggaaccgacagtagcaaagtactcggagacttgtttcatgcttgggcgtgatctc
acgtcagtattagtcgaggaagctaaagagattgagattaggcacactgttaaatggcaa
gcagcgcccataggtcttgtttgggatgaaccatatctcctcgggttgatgcaagacgac
aacgtagtggtgcaaacggtggagccgccgctctttgtgcaaactttgcctgaacttaat
aaagcaagactgatgtacagatgcaatcgcggcttgatattcgccgcatcagtggggcaa
gtctggtgcatcagttccgtggatattaacaagcagatccaacaactgttgaaagacaaa
cagttccagatagctatcaatctaacgaatttaaacgactgcccgcctgaagacaagaag
cagaggataaattctattaaaatgctcctcgccctagagttattcgacaataagcaatat
gcccaggctatggacgagttcggaaaactaaacactgatcctgctgatgtcatcaagtta
tttcccgaactagataataaaccaggcgggaagaatgggaaattgaaggctgaggattta
gagaaggcgttgaatgctttggtgaagtatttacttgagttgaggtcgaggaaaagcagt
gcttcggaggcgagtggcagtcaggatgacccgagccagaggaacgtcatgcagcaactt
gaattgattgatattacgctgctgaaatgctatttacagataaacgacgctctgatagcg
ccgctgctccgtttgaacaactgtcgcctcgaggaagcggagaagattcttgtagctcac
ggcaaacatagcgaactggttattttataccagacgaaagggcagcacttgaaagcgcta
cagttgctcaaggaacaggcaaagcaacctgattcgagccttaagggatataacnatgac
aagaagtatttgcagcagcttggagctgagcatgttaacctaatattcaaattctcagac
tggatcataagagattatcccgaagaaggcctaaaaatatttaccgaggataaaatcgaa
gtagaaacactaccccgtccgaaagtactagacttctttctaagggaacatgaaacttta
gtagtcccgtatctcgaacatgttatacatacatggaacgatactagttcaatattccac
gatgccttaatcagtatgtacgaggaaaaaataacagataaaaaacctgctaatatgact
gaggaagaattacagcatacgaaggcgaaacttctagcgtttcttgagaaatcttcaagt
tatactccagagagggttatattgcattttccaagtgacagcttgtttgaagagagagcg
gtcatactggaaaagcttgggaggcatgagcaggcgcttgctatttatgtgcagattcta
gttggagcattgtcagtgttaccggactctgtacctctggctagactgaaaacattccta
gaaagtgcgctggacaaccaactctcgcttaagcgaaaaactcaagtcctaaaggggttg
ctgtatgcggaaaaccaacaggtccaagagttgaaacagttccacgaatccaagagcgtc
atcataaacgactacaacgtgtgcccagtctgcaagaagcgtttcggcaaccagagcgcg
ttcgtccggtacccgaacggtgacatcgtgcattactcgtgccggctagaacaggcggcc
gtgcggcagtga
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