Choristoneura fumiferana (eastern spruce budworm): 141430078
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Entry
141430078 CDS
T11020
Symbol
Clp
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141430078 (Clp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141430078 (Clp)
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141430078 (Clp)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
141430078 (Clp)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141430078 (Clp)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCHC
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-CCCH_RBM22
zf-CCHC_2
Nab2-like_zf-CCCH_
zf-CCCH_DUS3L
Motif
Other DBs
NCBI-GeneID:
141430078
NCBI-ProteinID:
XP_073946720
LinkDB
All DBs
Position
8:complement(1334194..1341442)
Genome browser
AA seq
303 aa
AA seq
DB search
MEVIVANVDHIKFDIDFALDEQYGALPLPFPGMDKSTAAVCEFYSQQGGCTNGPQCPYRH
VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPES
KIKDCPWYDRGFCRHGPHCRHRHVRRVLCTNYLAGFCPDGLACKYMHPRFELPAPPEQTK
DAKRLPVCHYCSEVGHKASSCNKIPPEQREAAQRQEEARYRALGYIKPANEHENNESPQR
GPRMMHKPLEEVTCFKCGTKGHYANKCPKGHLAFLSSQNQNLNPNSHQNQNYHQNHHQFK
KPN
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
atggaggtcatagtagctaacgtagaccatattaaattcgacatagattttgctttggat
gagcaatatggagctctaccactaccttttcccgggatggacaaatctacggcagcggta
tgcgaattttacagtcagcaaggaggatgtactaatggcccgcaatgcccttatagacat
gtccgcggcgaccgtaccgtagtgtgtaagcattggctgcgaggcctctgcaagaagggc
gaccagtgcgagttcctgcacgagtatgacatgtctaagatgcctgagtgctacttctat
gcccgcttcaacgcgtgccacaataaagaatgcccgtttctccatatagacccggaaagc
aagattaaggactgcccttggtacgaccgaggcttctgtcggcacgggccgcactgccga
caccggcacgtgcgccgcgtgctgtgcactaactacttggctggcttctgccccgacggg
ctggcctgcaagtacatgcacccacgcttcgagctgcccgcgccgcctgaacagaccaag
gacgccaagcggctgcctgtctgccattactgctccgaagtcggacataaggcgtcgtcg
tgtaacaagatacctcctgaacaaagggaagcagcgcaacggcaagaagaagccagatac
agagccctcggctacatcaagccggccaacgagcacgagaacaacgagagtccccagcgg
ggcccgagaatgatgcacaagcccctcgaagaagtcacctgcttcaagtgtggcactaag
gggcactacgccaacaagtgcccgaagggtcacctcgccttcctctccagccagaaccag
aatctgaacccgaacagccaccaaaaccaaaactaccaccaaaaccatcaccagtttaaa
aagcccaactag
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