Choristoneura fumiferana (eastern spruce budworm): 141430480
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Entry
141430480 CDS
T11020
Name
(RefSeq) uncharacterized protein isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141430480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141430480
03009 Ribosome biogenesis [BR:
cfum03009
]
141430480
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141430480
Spliceosome [BR:
cfum03041
]
Complex A
U1 snRNP components
U1 related factors
141430480
Complex B
141430480
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
Helicases
141430480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141430480
NCBI-ProteinID:
XP_073947298
LinkDB
All DBs
Position
8:10743118..10776393
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AA seq
833 aa
AA seq
DB search
MQYNGFTSQHPIFRPRPDRNEQFGKMPFFGGLQDFGGPKNFGPRNNNMGNKNNFRPRNDF
NGIRPDFNTHKSENGMQNDFGGPKEFRPRNNYNGQPQKKDYEDKGPGSNMPFYNGKPDFG
GPKQQQSFQHKNNYGPKNFSNQNGHLNQQNFIQKKTFSNPNMGQQSNDFSGRKMQSMKAK
HPGDSLVKPMWDMANLEPIEKDFYKPHDDVESRSEEEVAMFRAAKEITVSGNNVPRPSQV
FDEGNFPDHVMNTIKEQGWVEPTGIQAQGWPIALSGRDMVGIASTGSGKTLAYMLPAAVH
IVHQQRIQRGDGPIALILAPTRELAQQIQSVAQAYSARGVIRNTCLFGGSPKGPQARDLE
RGVEIVIATPGRLIDFLERGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQV
LMWSATWPKEIQTLAEDFLNDYIKVNIGSLNLSANNNIKQIIETCEEHEKEAKLTNLLKE
ISSERDNKVIVFVETKKKVDDIARAVRRNGHKALAIHGDKSQPERDAVLTEFRNGATTIL
IATDVAARGLDVEDVKFVVNYDYPNSSEDYIHRIGRTGRCQQSGTAYTYFTSGDCRQARA
LVAVLRETGQTPPAKLNDMARNSNGSSGRNRWQQRKENNSGSSSPRQQSNQWNNKMANVT
NEEPQNAYQNRNMNQQPPRFSNQNQSNQGYRQNNFQKQQVPFPSPNLFETMGNYQGGYNN
GYQNGYNNQNGYGQRTYNNTRNNGQQQYRNNNVTANKPNGSSGSSYGSPPPHFATPPHYP
QMHPHHQDMLGGKFYGGGVGGGGPCGYQAAVGAGVPYPHLPPGPLLYAAPVQQ
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacaacggcttcaccagtcagcatcctattttcaggcctcgaccagaccggaat
gaacaattcggtaaaatgccattctttggtgggcttcaagattttggagggccaaaaaac
tttggtcctaggaacaacaacatgggtaataaaaacaactttcgcccaagaaatgatttt
aatggaataagaccggatttcaatactcacaaaagtgagaatggaatgcagaatgatttt
ggtggcccaaaagaatttaggcccagaaacaactacaatgggcaacctcaaaagaaagat
tatgaggataaaggtccaggaagtaacatgccattttataatggaaaacctgattttggt
ggacctaagcaacaacaaagtttccagcacaaaaataattatggacctaaaaatttcagc
aaccaaaacggtcatttaaatcaacaaaattttatccagaagaaaactttttcaaaccca
aatatgggtcagcaatctaatgactttagtgggcggaaaatgcaaagcatgaaagccaag
caccctggagacagtttggtgaagccaatgtgggacatggctaaccttgagccaattgaa
aaagatttctataagccacatgatgatgtagaatcccgttcagaagaggaggttgctatg
ttccgggctgccaaagaaataactgtaagcggcaacaatgtaccccgtccaagccaagta
tttgatgaaggaaatttcccagaccatgtcatgaacaccattaaagagcagggctgggtt
gaaccaactggaattcaggctcaaggctggcctattgccctttctggtcgtgacatggtt
ggcattgcctcaactgggtctggtaaaacattagcatacatgcttcctgctgctgttcat
attgtgcatcaacagcgtatccagagaggtgatggccctattgcactcattctggctcct
accagagagttggcacaacagattcagtctgtagcccaggcctacagtgctcggggtgtt
ataagaaacacctgtctatttggtggctctcctaaaggacctcaggcgcgagatctggaa
agaggagttgaaatcgttattgccacacctggacggttgattgatttcttggagagagga
acaacgaatctgcggcgatgcacatatttggtgttggatgaagctgacagaatgttagat
atgggttttgaacctcaaattcgcaaaatcatcgagcaaattcgaccagatcgtcaagta
ttgatgtggtctgccacatggcctaaagaaattcaaactcttgctgaagactttttaaat
gattacattaaagtaaacattggctctttaaatctgtctgcaaacaataatataaaacag
ataattgaaacttgcgaggagcatgagaaggaagctaaattgacaaacctcttaaaggaa
atttcatctgagagagataacaaagtgattgtgtttgttgaaacaaagaaaaaggtagat
gatattgcacgtgcagtccgtcgcaatggccataaagctctcgctattcacggcgacaag
tctcaaccagagcgtgacgctgtactcacggagttcagaaatggcgccactaccatcctc
attgctacggatgttgctgctcgcggtttggatgttgaggatgtcaagttcgttgttaac
tatgactatcctaattcttcagaagattacattcaccgaattggacgtactggtagatgt
caacaatctggtacagcttacacgtactttacaagcggcgattgccgccaagcacgagct
ctcgttgccgtgctgcgtgaaacgggccagaccccccctgcaaaactgaatgatatggca
cgtaactccaacggcagctcaggtcgtaatcgttggcaacaacgtaaggaaaacaacagt
ggctcaagttcaccacggcagcagagtaaccagtggaacaataagatggctaatgttaca
aatgaagaaccccagaatgcttatcagaaccgcaacatgaaccagcaacctcctcgattc
tccaaccaaaaccaaagtaatcagggctacagacagaataacttccaaaagcagcaggtg
cccttcccaagccccaatttgtttgaaactatgggcaactaccagggtggatataacaat
ggctatcaaaatggatacaacaatcaaaatggatatggtcaacgcacatacaacaacacg
cgcaataatggacaacagcagtaccgcaataataatgtaactgctaacaaacccaatggt
tcctccggttcttcctacgggtctcctccgccacatttcgctactcctccacactatcca
cagatgcatcctcatcatcaagatatgcttggcggtaaattctatggaggcggcgtgggt
ggaggcggtccctgcggttaccaggcggcggtgggcgctggtgtgccctacccgcacctg
ccacccggcccgttgctttacgctgcgcctgtgcaacagtga
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