Choristoneura fumiferana (eastern spruce budworm): 141430592
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Entry
141430592 CDS
T11020
Symbol
Sf3b3
Name
(RefSeq) splicing factor 3b subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141430592 (Sf3b3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141430592 (Sf3b3)
03041 Spliceosome [BR:
cfum03041
]
141430592 (Sf3b3)
03036 Chromosome and associated proteins [BR:
cfum03036
]
141430592 (Sf3b3)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
141430592 (Sf3b3)
Spliceosome [BR:
cfum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
141430592 (Sf3b3)
Complex B
141430592 (Sf3b3)
Complex C
U2 SnRNP specific factors
141430592 (Sf3b3)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
141430592 (Sf3b3)
TFTC complex
141430592 (Sf3b3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Fungal_virus_P2_N
Motif
Other DBs
NCBI-GeneID:
141430592
NCBI-ProteinID:
XP_073947470
LinkDB
All DBs
Position
8:14401746..14412062
Genome browser
AA seq
1218 aa
AA seq
DB search
MYLYNLTLQGSTAITHAVHGNFSGTKQQEIVISRGKILELLRPDPNTGKVHTLLKIEIFG
IIRSMMSFRLTGGTKDYIVIGSDSGRIVILEYIPSKNILDKVHQETFGKSGCRRIVPGQY
LAIDPKGRAVMIGAIEKQKLVYILNRDAEARLTISSPLEAHKSNTLVYHMVGVDVGFENP
MFACLEIDYEEADSDPTGEAAQKTQQTLTFYELDLGLNHVVRKYSEPLEEHANFLITVPG
GNDGPSGVLICSENYLTYKNLGDQHDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITIETDDDMVTEIKLKYFDTVPVATAMCVLKTGFLFVACEFGNHYLYQ
IAHLGDEDDEPEFSSAMPLEEGDTFFFAPRPLRNLVLVDELDSLSPILACHVADLAGEDT
PQVYLACGRGPRSSLRALRHGLEVAEMAVSELPGSPNAVWTVRRHKDEEYDSYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCHALGNDALVQVYPDGIRHIRADKRVNEWKAPG
KKTIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTERKKLSSDVSCMALGSVATGEQ
RAWFLAVGLNDNTVRIISLDPSDCLAPRSMQALPAGAESLCIVEQPFESGAKSALHLNIG
LSNGVLLRTTLDSVSGDLADTRTRYLGSRPVKLFKVRVQAAEAVLAVSSRTWLGYHYQNR
FHLTPLSYECLEYAAGFSSEQCAEGIVAISSNTLRILALEKLGAVFNQTYLPLEYTPRKF
VINNDTNHIIILETDHNSYTEEMKKQRRVQMAQEMREAAAGGGPEEQQLANEMADAFLSD
VLPENVFASPKAGAGMWASQIRVVDMGSGGGAPGTVARLPLEQNEAAVSLCVVRWAAHHE
HAQPHLVVGVAKDLVLSPRACSEGSLHVYKIYGTSGKLELVHKTPIDEYPGALAAFNGKL
LVGVGRMLRMYDIGRRKLLRKCENRHIPNLIADIKTIGQRIFVCDVQESVFCVKYKKREN
QLIIFADDTNPRWITNSCLLDYDTIAMSDKFGNIAVVRLPQSVSDDVDEDPTGNKALWDR
GLLNGASQKGEIVVNFHVGETVTSLQRATLIPGGSEALLYATVSGTLGALLPFTSREDHD
FFQHLEMHMRSENSPLCGRDHLSFRSYYYPVKNVIDGDLCEQFNSLEPAKQKAIAGDLER
TPAEVSKKLEDIRTRYAF
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtataatttgactctacaaggctctacagctattacccatgcggtgcatggg
aacttctcgggcacgaagcagcaggagatagtgatttctcgtggtaaaatcttggagttg
ctgcgaccagacccgaacaccggcaaagtgcatacactgctgaagatcgaaattttcggc
attatccgatctatgatgtcatttcggcttactggtggcacaaaagattatattgtcatc
ggctcggactctggacgcattgtgatcctggagtatatcccatctaaaaatatccttgac
aaagtgcatcaagagacatttggaaagtctggatgtcgcagaatagtgcctggacagtac
ctggccattgacccgaaaggcagagctgttatgataggggctatagaaaaacagaaactt
gtgtacattttaaatagagatgcagaagcgagattgaccatctcctctccactggaagcg
cacaagtctaacacattggtgtatcatatggtgggagtggatgtaggttttgaaaaccca
atgtttgcttgccttgaaatagattatgaagaggcagactcagaccctacaggtgaagct
gctcagaagactcaacagactttgactttctacgaattggatttgggtcttaaccatgtt
gtgagaaaatattcagaaccacttgaagaacatgctaactttctgatcactgtgccagga
ggaaatgatggcccatcaggtgtcctgatttgttcagagaactatttgacatacaaaaat
ttgggagatcagcatgacatcagatgtcccatcccacgccgtcgtaatgacttagatgac
cccgagagaggcatgatctttgtatgctctgctacacacaaaaccaagtccatgtttttc
tttttggctcaaactgaacaaggagatatcttcaaaataacaatagaaactgatgatgat
atggttacagagattaaattgaagtactttgacacagtgccagtagccactgccatgtgt
gttctaaagactggatttctctttgtcgcctgtgaatttggcaaccactacctgtatcaa
attgcacacttgggggatgaagacgatgagccagaatttagctcagccatgcctttagaa
gaaggagacacattttttttcgcgccaagacctctcaggaacttagtgttggttgatgaa
ttggactccttgtctcctatattagcttgccatgtggccgatttagctggcgaagatact
cctcaagtctacttggcgtgcgggcgtggtccgagatcgtctctcagagcgttaagacat
ggtttggaagtggcggaaatggctgtttctgaactgcccggttctccaaatgctgtatgg
accgttcgacgccacaaagatgaggaatatgattcatacatcattgtgtcgttcgttaat
gccactcttgtgctgtctatcggcgagactgtggaggaagtgactgactctggctttctc
ggcacgacgccgacgctgagttgccacgcgctcggtaacgacgcgcttgtacaagtttat
cccgacggtatcagacacatccgcgcagacaagcgtgtcaacgaatggaaggctcccggc
aagaaaaccattgtcaagtgcgcggtcaatcagagacaagtggttatcgctctcactggc
ggtgaacttgtctattttgagatggatccgactggccaattgaatgaatataccgagagg
aaaaaactgtcttctgacgtatcttgtatggcgcttggctctgtggccacaggagaacaa
agagcttggttcttggctgtgggactgaacgataataccgtcagaataatatccctggat
ccatcggattgtctggcgccacggtccatgcaagcactgccggcgggtgctgagtctctc
tgtatagtggaacaaccttttgaatctggagctaagtctgcccttcatctgaacatcggc
ctcagcaatggtgttttactaagaaccacattggattctgtcagtggagacttggctgat
accaggacaagatatctgggttcgaggccagtaaagctgttcaaagtaagagtgcaagca
gcggaagccgtgctcgccgtgtcttcaagaacatggctcggataccactaccagaacaga
ttccacctgactcccctctcctacgaatgcctagagtatgctgcgggattcagctcagaa
caatgtgccgagggtattgtggcgatctcatcaaatactttaagaattttggcactggag
aagttaggcgcagtattcaatcagacttacttacccttggagtacacgccgcggaagttc
gttatcaacaatgatactaatcacatcatcatactagaaactgatcataattcttacact
gaagagatgaagaaacagagaagggttcaaatggcacaagaaatgcgtgaagcggcagct
ggcggtgggccggaggaacaacaacttgccaatgagatggcggacgctttcctgtcagac
gtattaccagaaaacgtcttcgcgtccccaaaagcaggagcaggcatgtgggcgtcccag
atccgcgtggtagacatggggtcgggcggcggcgcgccgggcacggtggcgcggctgccg
ctggagcagaacgaggccgccgtgtcgctgtgcgtggtccgctgggccgcgcaccacgag
cacgcgcagcctcatctagtggtgggcgtggccaaggacctcgtgctgtcgccgcgcgcc
tgcagcgagggtagcctccacgtctacaagatatacggcaccagcggcaaactagaactg
gtccacaagacccctatcgacgagtaccccggcgccttggccgccttcaacgggaaactg
ctcgttggcgtcggccgcatgctcagaatgtatgacatcggcagaagaaaactcctccgc
aagtgcgagaatagacatatccccaatctcatagcagacatcaagaccatcggccagagg
atcttcgtctgcgatgtccaggaatctgtgttctgtgtgaaatacaaaaagagggagaac
cagttgatcatctttgcggacgacaccaacccgagatggataactaacagctgcttgttg
gattacgacacgatagcaatgtctgacaaattcggcaatatcgctgttgtgagactgccg
cagtctgtatctgatgatgttgatgaagaccctactgggaacaaagccttatgggaccga
ggtctccttaacggcgcgtcacaaaagggagagatcgtagtgaattttcacgtgggtgaa
acagtcacgtctctccagcgagcgacactcattcctggcggttccgaggcgctactgtac
gcgacagtctcgggcacgctgggcgcgctgctgccgttcacgtcgcgggaagatcacgac
ttcttccaacatctcgagatgcacatgcggagcgagaattcgcccctctgcggacgtgac
cacctttccttccggagttattattacccagtcaagaatgtgatagacggcgatctctgc
gagcaattcaactctctggagcctgcgaaacaaaaggccatcgcaggcgatctagagcga
acgcccgctgaagtctccaagaaactagaagatattaggacaagatacgcgttttaa
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