Choristoneura fumiferana (eastern spruce budworm): 141430638
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Entry
141430638 CDS
T11020
Symbol
Rm62
Name
(RefSeq) ATP-dependent RNA helicase Rm62
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141430638 (Rm62)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141430638 (Rm62)
03009 Ribosome biogenesis [BR:
cfum03009
]
141430638 (Rm62)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141430638 (Rm62)
Spliceosome [BR:
cfum03041
]
Complex A
U1 snRNP components
U1 related factors
141430638 (Rm62)
Complex B
141430638 (Rm62)
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
Helicases
141430638 (Rm62)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
141430638
NCBI-ProteinID:
XP_073947538
LinkDB
All DBs
Position
8:complement(15670738..15675717)
Genome browser
AA seq
546 aa
AA seq
DB search
MSGNWSNSRGGSGGSRYGSSGGGSKFGGGGGSRFGGGGGGGYGGGGGKKDFTGGQNMRRP
NWDTMSLQPFNKNFYNPHPSVLSRSPYEVEEHRSQHEITVSGVDVPNPIQRFEEGNFPDY
VMKGISGMGYKEPTPIQAQGWPIAMSGKNLVGIAQTGSGKTLAYILPAIVHINNQEPLRH
RDGPIALVLAPTRELAQQIQQVATDFGNTAYVRNTCVFGGAPKREQARDLERGVEIVIAT
PGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK
EVKKLAEDYLGDYVQINVGSLQLSANHNILQIVDICQEHEKENKLNVLLQEIGQSQDPGA
KTIIFVETKRKVENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKQGRANILVATDVAA
RGLDVDGIKFVINFDYPNSSEDYIHRIGRTGRSKTKGTSYAFFTPSNSRQAKDLVSVLQE
ANQMISPQLQSMADRCGGGGGWNRNRYGGGRGGGGGGGSFKRGTNFGRNGQGGGGSGGHR
RFNDSY
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaattggagcaatagccgtggcggaagcggcggttccagatatggttcatct
gggggtggaagtaaatttggcggcggaggaggtagccgcttcggtggtggcggtggtgga
ggttatggcggcggtggcggcaagaaagacttcactggaggccaaaacatgcgccgtcct
aactgggacacaatgtcgctgcaaccattcaacaagaacttctacaacccacatccttca
gtcctcagtcgctccccttatgaagtagaggaacacagaagtcaacatgagattacagtt
agtggagttgatgtcccaaaccccatccaacgttttgaggagggcaatttccctgactat
gtaatgaagggtattagtggcatgggctacaaggaacccactcctattcaagcccaaggc
tggcctattgctatgtctggaaaaaatttggtaggcattgcccaaacaggctctggaaag
accctggcttacatactgcctgccattgtgcacattaacaaccaggagcccctcagacac
agggatgggcctattgctttagtgctcgccccaactcgagaactagctcaacagattcaa
caagtagcaactgattttggaaatactgcctatgtccgtaacacttgtgtgttcggagga
gcacctaagagggagcaagcccgtgacttggagcgtggtgttgagattgtcattgccact
cctggcagattaattgatttccttgaaaaggggaccaccaatctccagcgttgcacttac
ctggtcttggatgaagctgatcgcatgttagacatgggcttcgaacctcagattagaaag
atcattgaacagatccgcccagacaggcagactctgatgtggtctgccacatggcccaaa
gaagtgaaaaaattggctgaagattatctaggtgattatgtgcagatcaatgttggatct
ctgcagttgtctgccaatcacaacattttacaaattgttgacatttgccaggaacatgaa
aaggaaaacaaattaaatgtattgctacaagaaattggacaaagtcaagatcctggtgca
aagacaattatttttgttgaaactaagagaaaagtggaaaatattactagaaatattaga
cgttatggctggccagctgtttgcatgcatggagataaaacacagcaagaaagagatgaa
gttttatatcagttcaaacaaggccgtgccaatattttagttgccactgatgttgctgcc
agaggacttgatgttgatggtatcaaattcgttataaactttgattaccctaactcttct
gaggattatattcaccggataggcagaacgggccgttcaaaaacgaaaggcacctcctat
gctttcttcacaccttcaaattcccgtcaagcaaaagatcttgtatcagtactacaagaa
gccaaccagatgatcagtcctcaactccagtcgatggcagaccgttgcggcggtggcgga
ggctggaacagaaaccggtacgggggtggccgcggaggcggtggtggcggcggctccttc
aagcgtggcaccaacttcggtcgcaacggacagggaggtggcggcagtggcggccacaga
cgatttaatgactcttattaa
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