Choristoneura fumiferana (eastern spruce budworm): 141430891
Help
Entry
141430891 CDS
T11020
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03013
Nucleocytoplasmic transport
cfum03015
mRNA surveillance pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141430891
09122 Translation
03013 Nucleocytoplasmic transport
141430891
03015 mRNA surveillance pathway
141430891
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141430891
03041 Spliceosome [BR:
cfum03041
]
141430891
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141430891
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141430891
Spliceosome [BR:
cfum03041
]
Complex C
Other components
EJC/TREX
141430891
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
141430891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
141430891
NCBI-ProteinID:
XP_073947855
LinkDB
All DBs
Position
9:complement(57670..59293)
Genome browser
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQAEQQTADGATEAAPKKEVKGSYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQIEPSENHVYVLVMCHT
RELAFQISKEYERFSKYMAGVRVSVFFGGMPIQKDEEVLKTACPHIVVGTPGRILALVNS
KKLNLKHLKHFILDECDKMLESLDMRRDVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIA
LAQLLTDQNFPAIGIHRNMTQDERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPEDSDTYLHRVARAGRFGTKGLAITMVSDEGDAKILNEVQDRFDVNITELPEEIELST
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaacgacgatcttttggactacgaagacgaagagcaggcagaacagcagact
gccgacggagcgacagaagcggcgccaaagaaagaggttaagggatcctatgtatcaatc
cacagttctggcttcagggatttcctgctaaaacctgaaatattgcgtgctatcgtcgac
tgtggtttcgaacatccctcggaagtgcaacatgagtgtataccgcaagccgtcctcggg
atggatatcttgtgccaagcgaagtcgggtatgggtaagacagctgtgtttgttctagca
acgctgcaacagatcgaaccttctgaaaaccatgtctacgtactcgttatgtgtcatacc
agagagctggcattccaaatcagcaaagagtacgagcgattctcgaagtatatggctgga
gtacgagtgtcggtgttctttggtggcatgccgatccaaaaggacgaagaagtcctcaag
accgcctgcccgcacatcgtagttggcactccgggcagaatactggctctagttaatagc
aaaaagctaaacctgaagcatctgaaacacttcattttggatgagtgcgacaaaatgttg
gagtcactcgacatgagaagagatgtccaggaaatatttaggaataccccccatggtaaa
caagttatgatgttctccgctactttgagcaaggaaatccgaccagtgtgcaagaagttc
atgcaggatcctatggaagtatatgtagatgatgaagccaagctgaccctgcatggactg
cagcagcattacgtgaaactaaaggaaaacgagaagaacaagaagctgtttgaacttcta
gatgtcttggaattcaatcaagtagtcatatttgtgaaatctgtgcagaggtgcatagcc
ctcgctcaactgctcacagaccagaacttcccggcgattggcatacatcgcaacatgacc
caagatgagcgtctgtcccgctaccagcaattcaaggacttccagaagaggattctagtc
gcaaccaatctatttggaagaggcatggacattgagcgagtcaatattgtctttaactac
gacatgcctgaggattccgacacataccttcaccgtgtcgcccgtgctggacgtttcggt
accaaaggtctggccatcaccatggtgtctgatgaaggagacgccaaaatcctgaatgaa
gtccaagaccgttttgatgtcaacatcaccgagctgccagaagagattgagctgtccact
tacattgaaggccgatag
DBGET
integrated database retrieval system
