Choristoneura fumiferana (eastern spruce budworm): 141430973
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Entry
141430973 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: protein strawberry notch-like
KO
K26273
protein strawberry notch
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cfum03036
]
141430973
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
141430973
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
SBNO
ResIII
Helicase_C
DEAD
Motif
Other DBs
NCBI-GeneID:
141430973
NCBI-ProteinID:
XP_073947984
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All DBs
Position
9:2355518..2401443
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AA seq
1358 aa
AA seq
DB search
MSKRAAYGDDEDNPPTPSDDSDFDDDEDPDNLEVPGGGKTLAAAAQLGSKPKGTPAPATV
TVRATTNPLAAPSGVAFGQSANVKPIKISANTLSKPINLGLSRGGGVAAPSPYAAGSSAA
YSAALLAQMELANLPGMNQYLLQNLNAMLATGMGGPLAGMLGQMAQFAPSWPVKQPLYPM
DKMPGADEEEVDDEEMGVAETYADYMPTKLKLGRKHPDPVVETASLSSVEPIDVSYTLSL
PDETIRSGQLSALQLEAVVYTAQAHEHMLPGGTRAGFLIGDGAGVGKGRTIAGIIFENYL
KGRKRAIWVSVSNDLKYDAERDLRDIGAGKIEVHPLNKLKYAKISSAVNGNVKKGVIFCT
YSALIGETQATTTTTKYRTRLKQLLQWCGEDFDGPIVFDECHKAKNLCPVGSGKATKTGL
TALELQNKLPKARVVYASATGASEPRNMAYMVRLGIWGEGTPFPTFMDFINAVEKRGVGA
MEIVAMDMKLRGMYIARQLSFHGVSFKIEEVPLTDAFRDTYDKSVALWVEAMQRFTEAAE
LIDAEARMKKTMWGQFWSAHQRFFKYLCIAAKVHHAVVTAREAVKCGKCVVIGLQSTGEA
RTLDQLERDDGELSDFVSTAKGVFQSLVEKHFPAPDRGRINRLLGLEAPQKVAPHPAPRP
ALPAARNGADDAHTSKRKLTARQQVNMAAKRARGGSSSDEFIRGSEDEAEAESADERRRS
DSESDSNPFRAGSGSDSDTEPWMRKKKPLKKKKNASPKKKPSTTQDKIENMFERKNNVAP
NATVTVTAPGGHSLTGTPVGTNGLYLGPARNQPPPRSAIERACSMKEELLAAIERLAKRL
PPNTLDQLVDELGGTENVAEMTGRKGRVVQTEDGQILYESRSEADVPLETLNLTEKQRFM
DGEKDVAIISEAASSGISLQSDRRARNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNA
PEYIFLISDLAGERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRTALEAV
MKAIMKYETPLVPPPRDYNGDFFQDIASALVGVGLIINSESAPGVLSLDKDYNNMSKFLN
RILGMPVDLQNRLFKYFTDTLTAVMEQAKRSGRFDLGILDLGSAGECVRRVRCVRYLRRH
ATGTAPVQLHTVHSERGMEWTDALEKHSLLTGPKEGFYLSLTARNNKYTAVLCCATAQPH
ARAKLTKKEQMYQIYRPNTGSQLRLEXLAEIEKKYKRVTAEEAETSWRAQHEASRRVCSH
AYWRASCRNAANCEVGLRLRTYHVLSGSVLAVWARVEGVLAQRSQLNKMQVVRIKTDEGL
KIVGTMIPKNCVEPLKETLASDAVNVTEQVFDTTDTLK
NT seq
4077 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaacgggcagcttatggggatgacgaagacaatccacccaccccatcggatgac
tctgactttgatgatgatgaagacccagataatttggaagtgccagggggcggcaaaacc
ctggctgccgcggcacagctcggaagcaaaccgaaaggcacccccgcgcccgctacggtc
acagtgcgtgctactacaaaccctctcgctgctccatctggtgtcgccttcgggcagtct
gcaaatgtcaaaccaatcaagatctcagccaacactctctccaaacctattaacttggga
ctatcgcgaggaggaggagtagcggcgccgtccccgtacgcggcgggatcctcggccgcc
tacagcgccgcgctgctcgctcagatggagctcgcgaacctgccgggaatgaaccagtac
ctgctgcagaacttaaacgcgatgctggcgaccggcatgggcggcccgctggccggcatg
ctggggcagatggcgcagttcgcgccctcctggcccgtcaagcagccactctaccccatg
gacaagatgcccggcgctgacgaagaagaagtagatgacgaagagatgggggtcgcagaa
acatacgcagactacatgccaacaaaactgaaactcggccgcaagcacccggacccggtg
gtggagacggcgtccctctcgtccgtggagcccatcgacgtgtcgtacactctcagcctg
cccgacgagaccatacggagcgggcagctgtccgcgctgcagctggaggccgtcgtgtac
accgcgcaggcgcacgagcacatgctgcccggcgggacgcgcgccggcttcctcattggc
gacggcgcgggcgttggcaaaggccgcacgatcgcggggatcatattcgagaactatctg
aagggcaggaagcgcgccatctgggtgtcggtgtccaatgatctcaagtatgacgcggag
agggacctccgggacatcggcgccggcaagatcgaggtgcatccgcttaacaagttgaaa
tacgcgaagatatcgtccgcggtgaacggcaacgtgaagaagggcgtgatattctgcacg
tactcggcgctgatcggagagacgcaggccaccaccaccaccaccaagtaccgcacgagg
ctcaagcagctgctgcagtggtgcggggaggacttcgatggacccatcgtattcgatgag
tgccacaaagcgaaaaacctctgtccagtcggctcgggcaaggccacaaaaacgggtctt
accgccctagagctgcaaaacaaattgcccaaagcgagggtagtttacgcgtcggcgacg
ggcgcctcggagcctcggaacatggcgtacatggtccggctgggcatttggggggagggg
acgcctttccccacgttcatggactttattaatgctgtcgagaagaggggcgtgggcgct
atggagatcgtagccatggacatgaagctgcgaggcatgtacatcgcgcggcagctgtcc
ttccacggggtgtccttcaagatcgaggaggtgcctctcacggacgccttccgggacacc
tacgacaagtccgtggcgctgtgggtggaggcgatgcagcggttcacggaggcggccgag
ctgatcgacgcggaggcgcgcatgaagaagaccatgtgggggcagttctggtcggcgcac
cagcggttcttcaagtacctctgtatcgccgctaaggtacatcacgcggtggtgacggcg
cgcgaggcggtcaagtgtggcaagtgcgtggtgatcggtctgcagagcaccggcgaggcg
cgcacgctcgaccagctcgagcgggacgacggcgagctcagcgacttcgtgtccaccgcc
aagggcgtgttccagtcgctggtcgagaagcacttcccggcgcccgaccgcggccgcatc
aaccggctgctcgggctggaggcgccgcagaaggtggcgccgcaccccgcgccgcgcccc
gcgctgcccgccgcacgcaacggcgccgacgacgcacacaccagcaagaggaagctgaca
gcgcgacagcaagtgaacatggcggccaagcgcgcgcgcggcggctcgtcctccgacgag
ttcatccgcggctccgaggacgaggcggaggcggagtcggccgacgagcgccgccgctcc
gactccgagagcgactccaaccccttccgcgccggttccggctccgatagtgacacagaa
ccctggatgagaaagaagaaaccgctcaagaagaagaagaacgcgtcaccaaagaagaag
ccttccacgactcaggacaagatcgagaacatgttcgagaggaaaaacaacgtcgcgccc
aacgccacggtcaccgtgacggcgcccggcgggcacagtctcaccggcacgccggtcggc
accaacggactctacttaggtccggcgcgcaaccagccgccgccgcggtcggcgatagag
cgcgcctgcagcatgaaggaggagctgttggccgccatcgagcgcctcgccaagcggctg
ccgcccaacacgctcgaccagctggtggacgagctcggcggcaccgagaacgtggctgag
atgacagggcgcaaggggcgcgtggtgcagacagaggacgggcagatcctgtacgagagc
cggtcggaggccgacgtgccgctggagaccctcaacctcaccgagaaacagcgcttcatg
gacggggagaaggacgttgccattatatcagaagccgcctccagcggtatctctctacag
agcgatagaagggcgcggaaccagcggcggcgtgttcacatcacgctggagctgccgtgg
tccgccgacagagccatacagcagttcggtcgcacccaccggtcgaatcaagtgaacgcg
ccggaatatatcttcctgatctctgacctggcgggcgagcgccggttcgcgtccaccgtg
gccaagcggctcgagtcgctcggtgcgctcacgcacggcgaccgccgcgccaccgaaact
agggatctcagccagttcaacatcgataacaaatacggtcgaacggcgctggaggcggtg
atgaaagcgataatgaaatacgagacgccactcgtgccgccgcctcgggactacaacggc
gatttcttccaggatatcgccagtgctctggttggtgtagggctcataataaacagcgaa
tctgcgccgggcgtgctctctctagacaaggattacaacaatatgtccaagttcctgaac
aggatactgggcatgccggtagacctgcagaacaggctcttcaaatacttcaccgacacg
ctcaccgccgtcatggagcaagcgaagcgcagcggtcgcttcgacctgggcattctggac
ctgggcagcgcgggagagtgcgtgcggcgcgtgcgctgcgtgcgctacctgcggcgacac
gccaccggcaccgcgcccgtgcagctgcacaccgtgcactctgagcggggcatggagtgg
acagacgcgctagagaagcactctctcctcacaggccccaaggaaggcttctacttgtcg
ctgacggcacgcaacaacaaatacacggccgtgctgtgctgtgccaccgcgcagccccac
gcgagggccaagcttaccaagaaagagcagatgtatcagatatacagacctaacacgggt
tctcaactccggctggagntcttggctgagatcgagaagaaatacaagcgcgtgacggcc
gaggaggccgagacgtcgtggcgtgcgcagcacgaggcctcgcgccgcgtctgcagccac
gcctactggcgcgccagctgccggaacgccgccaactgcgaggtgggcctgcggctgcgc
acgtaccacgtgctgtcgggctcggtgctggcggtgtgggcgcgcgtcgagggcgtgctg
gcgcagcgctcgcagctcaacaagatgcaggtcgtgcgcatcaagaccgacgagggactc
aagatcgtcggtacgatgatcccaaagaactgcgtggagcccctcaaggagacgctggct
tctgacgccgtgaacgtcaccgaacaggtgttcgacaccaccgacacgctcaagtga
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