Choristoneura fumiferana (eastern spruce budworm): 141431124
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Entry
141431124 CDS
T11020
Symbol
Gnf1
Name
(RefSeq) germ line transcription factor 1
KO
K10754
replication factor C subunit 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03030
DNA replication
cfum03410
Base excision repair
cfum03420
Nucleotide excision repair
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141431124 (Gnf1)
03410 Base excision repair
141431124 (Gnf1)
03420 Nucleotide excision repair
141431124 (Gnf1)
03430 Mismatch repair
141431124 (Gnf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfum03032
]
141431124 (Gnf1)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141431124 (Gnf1)
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
141431124 (Gnf1)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
141431124 (Gnf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
Rad17
AAA_22
AAA_30
AAA_17
AAA_14
BRCT_2
AAA_5
AAA_19
AAA_16
AAA_assoc_2
RuvB_N
AAA_18
AAA_33
RNA_helicase
NTPase_1
RCF1-5-like_lid
nSTAND3
Motif
Other DBs
NCBI-GeneID:
141431124
NCBI-ProteinID:
XP_073948238
LinkDB
All DBs
Position
Z:complement(20482836..20507798)
Genome browser
AA seq
1091 aa
AA seq
DB search
MSKDIRLFFRPQKPQKPKLEDDDDVIPESPDVEIKTKKREGRKKRILSDSDEEIFSTKKK
KSDESSSKSTKKTVKLKLPVKKELKEVKAVDIFGSAPIKRTEPIVKKVKKNTETGIHSDD
DFDQSLLMLDNAEVNVQKNTNEEEFRPNKSDSKETTISVPNTQDTEDKTDSSTKLMESNG
FSISHMNSTSEKVESDKFLKKDSKRPIGELNSTEAGPIKHRKTSDSKDIPSNLKIDKDEK
CKTIKDKKKVPECVNASVDHDSKETKREKDLDKSLIENVLTDEERFERKRYSAVLYQKYL
NRSGPKHLGAKDMPEGAPNCLKDCAFLLTGVLDSFEREEVSEAITKLGGTIKNSMSRKVT
HVLAGDEAGPAKIAKAQEFGIPILNESDFLALIVNKSDMQKSNESTKHEKNRNSQKINDK
SFSQKPHKDTEKSLNRKSYNDHEESLCQKSDTDRSVTSTQRASKSKSDINHKQCPKEKTN
INDNSKTEKFVNIKEKNSESVSKLCASTSKDLNDSSSDSNSKIIANSHQSSMWVEKYKPQ
TLKQIIGQHGEASNVKKLCNWLTKWYANRKAKLPKPSPWTKNDDGGYYKAALLSGPPGVG
KTTTVSLVCKELGFDTVEFNASDTRNKTLIKEQIGELLTTTSLSGFAKGQTGKQAVSKKH
VLVMDEVDGMAGNEDRGGLQELIGLIKAASVPIICMCNDRNSQKMRSLVNYCYDLRFTRP
RVDQIKAAMMSVCCKEGIKVPGEALAQLIVAANQDVRQTLNLLSMWAVDPARASADALHR
DAAQTKKDIKLGPWEAIRKVFSAEEHKTMSIHDKSDLFFYDYSLAPLFVQENYLQVAPHC
PKHEVLERLSRAADSISAGDLVDARIRSNQAWNLLPVQAMYSSVIPGSAMSGHLTGQIQF
PAWLGKNSRRSKMFRICQEIHAHTRLSTTGSKSSIFLDYCTHLRDAIVTPLVKDKADGIA
QSLEVLESYHLLREDLESLTEMSLWPGQRNPMILIDSKVKAAMTRTYNKKAMALPYAPGA
VKRARAGAGSDDGELADDGDDDDHPEDSDPESDALIKKNKVKVTEKTSARKDAPGTSKDK
PTSSKGKGKKK
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaggatatccgactattttttaggccacagaaaccacaaaaacccaagttagaa
gatgatgatgatgtcattccagaatctcctgatgttgaaattaaaaccaagaaaagagaa
ggtagaaagaaacggattctcagtgactcagatgaagagatattttcaacaaagaagaag
aaatctgatgaaagtagcagtaaatcaacaaaaaagacagttaaacttaagttaccagtc
aagaaagagcttaaagaggtaaaagcagttgacatattcggcagtgcgcctattaaacgt
acagaaccaattgttaaaaaagtgaaaaagaacacagagacaggtattcattcagatgat
gattttgatcaaagtctgttaatgcttgataatgctgaagtaaatgtccaaaaaaatact
aacgaagaagaatttagaccaaataaatcagacagcaaagaaactacaatatctgtgcca
aatactcaagatactgaagacaaaactgacagttcaacaaaactaatggaaagtaatggg
tttagcataagccatatgaattcaacttccgaaaaagttgaatcagataaattcttaaag
aaagatagtaagagacccattggtgaacttaattcaactgaggctggtccaataaagcac
agaaaaactagtgattcaaaagacataccaagtaacttaaaaatagataaagacgaaaaa
tgcaaaaccataaaagacaaaaagaaagtgcccgaatgtgtgaatgcttctgttgaccat
gattcaaaagaaaccaaaagggagaaggatctcgacaaaagtttgattgagaatgttcta
acagatgaggaaaggtttgagcgtaaacgatattctgcagtattgtatcaaaagtattta
aataggtctggacccaaacatttaggagctaaagatatgcccgagggtgcacctaattgc
cttaaggactgtgcatttttgctaaccggtgtacttgactctttcgaacgagaagaagtt
tccgaagctattacgaagttgggtggaactataaaaaactctatgagtagaaaggtgaca
catgttttagctggagatgaagcaggtcctgcaaaaattgctaaagctcaagaatttggt
attccaatcttaaacgaaagtgactttttggcactaattgttaataaatcagacatgcag
aaatccaatgagtccactaaacacgaaaaaaatcggaactcccagaaaatcaatgataaa
agcttcagtcagaaaccgcataaggatactgaaaagagtttaaatcggaaatcatataac
gaccatgaagagagtttatgtcaaaaatctgatacagacaggagcgtcacatcgactcaa
agagctagcaaaagtaaatctgatataaaccataaacaatgtccaaaagagaaaaccaat
attaacgataattctaaaacggaaaaatttgttaatataaaagaaaagaattcggaaagt
gtttctaaattatgtgcgtcaacaagtaaggatttaaatgattcaagcagcgactctaat
agcaaaataatcgctaactcgcatcaatcgtcaatgtgggtagagaagtataaaccgcaa
acactgaagcaaattattggccaacatggagaagcaagcaatgttaaaaaactttgcaat
tggcttacaaaatggtacgctaatagaaaagcgaaactacctaaacccagcccatggacg
aaaaatgatgatggcggatactacaaggcagctctgctatcggggccgccgggtgtaggc
aaaactactaccgtgtctctcgtgtgcaaagagcttggttttgacactgtggagttcaat
gcttctgacaccagaaataaaactcttataaaagagcagatcggcgaattgctaacgacc
acttccctctctggatttgccaaaggacaaacaggcaaacaggcggtctccaagaaacat
gttttagttatggacgaagttgatggtatggctggtaatgaagacagaggcggtctgcaa
gagttaataggcttaataaaagctgcatccgttcccatcatttgcatgtgcaacgatagg
aatagtcagaagatgagatcgcttgtcaattattgttacgaccttagatttaccaggcca
cgggttgatcagattaaggcggcaatgatgtcggtttgttgcaaagaaggcatcaaggtg
cccggcgaggcgctggcgcagctgatcgtggccgccaaccaggacgtgcggcagacgctc
aacctgctgtccatgtgggcggtcgacccggcccgcgcaagcgccgacgccctgcaccgc
gacgccgcgcaaaccaagaaggacatcaaattgggcccatgggaagctatacgtaaagtg
ttttctgcggaagaacacaaaaccatgagcattcatgacaagagcgatttattcttctac
gactacagcctcgcaccgctcttcgttcaagaaaattatttgcaagtcgctccccactgc
cctaaacatgaagtgcttgaacggctaagcagagctgctgacagtattagtgcaggagat
cttgtggatgccagaatccgtagcaatcaagcttggaacctcctgcctgttcaggcgatg
tacagctcagtcataccgggatctgcgatgtcgggccatctcacaggacagatacagttt
ccagcttggctgggtaaaaactcacgcagaagtaaaatgttcaggatatgtcaagaaatt
catgctcacactagactgagtacaacaggttcaaagtcgtctatcttcctcgactactgc
acgcacctacgtgacgctatagtgacacctctcgtcaaggacaaagctgatggcattgca
cagtccttggaagtacttgaatcatatcatctactgagagaagatttggagtcgctgacc
gagatgtcgctctggcctggtcaaagaaatccaatgatattaatagactcaaaggtgaaa
gctgcaatgactcgtacatacaataaaaaagcgatggcactaccgtatgcgccgggtgcc
gtgaagcgcgcgcgcgccggcgccggctctgacgacggtgaactcgccgacgacggcgac
gacgacgaccacccggaggacagtgatccagaaagcgatgctctcattaagaaaaataaa
gtcaaagttactgagaagactagcgccagaaaagatgcacctggtaccagcaaagataag
ccgacttcgagcaaaggaaaaggcaaaaagaaatag
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