Choristoneura fumiferana (eastern spruce budworm): 141431167
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Entry
141431167 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: squamous cell carcinoma antigen recognized by T-cells 3-like
KO
K22611
squamous cell carcinoma antigen recognized by T-cells 3
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141431167
03036 Chromosome and associated proteins [BR:
cfum03036
]
141431167
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
141431167
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Histone modification proteins
Other histone modification proteins
141431167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Suf
Lsm_interact
Motif
Other DBs
NCBI-GeneID:
141431167
NCBI-ProteinID:
XP_073948307
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All DBs
Position
9:9156694..9206888
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AA seq
894 aa
AA seq
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MAIVEDEVRNESEEENEIEVVVEEDDADQDSDDSDDDDDEEVLERKVAELEKRIAEDPYS
YDDHIQLIQALWGLSELDRWRNAFDRLQQMSMLKAEHWLLRIQTEETLAHSAEAKEQLVE
LFRQASLDCYYIPILSEWCSWALGVGGAAAARAHLDEVLRRAGPDPLSGKLFWDAKHELE
KAQLESMSADDPDYKEQRERVVWSLEEIVSRPLLNGEEAWPHFQQAAAELHGQEYVDKVK
KQHDAAAEYLQKITPYEDRLLTTENPEEKIKVYEEYIDKVKDLSQEEKFADCDSNGILKV
LYDRATYECVSASLRXSLLHAVRASLAAHSSRATHSRVLAACTRRRPRRATFWLLTMQQA
EHEDKGFDEVKSIFETALSKGMESYKQAEALWLGYLEALRRGTAFDNEPDVERLRRTFRL
AWDSLAETWGEEANDCEVPLYWARLEYNRMKDPKQGKEIFEEIFKYGENKTMSKYWEAFI
NLESHREPSLSENKLRELHRRALRFVTDYPPAAARLWTDLERDYGQLATARECADLCEAK
LKEWRESYQAMKDKMTNQKKGKPTQNKKSKIDAKKKKEDDKPKKGKRKSDESTAESGAKR
KKDGTMEVDEKAKVGASGSLKRSHDEDGGGDADTDKKRQRTASAESAGRAGNREACTLFV
SNLDFKVNEQNLRAKLSEFGEVASMRVRAGVKQFGGSICYCQYTTPEAVDEAVKHDRTPL
DGRPMFLSRYSASKSKGAFKYATTTEKNKLFVRNLPYSHCTKEHLTEIFDKFGKLSDVRV
VTFKDGKPKGLAYIDYEDEASAAAAVEKTNGLLVGDRTIDVAVSAPPPRGDAPGPSLGQP
KRDAGGGMRRTQLSSFIPSVLQKPSTSKAPANGSHNGDSRPLSNSDFRSLLLKK
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atggccattgtagaggacgaagtgcggaatgagtctgaggaggagaatgaaatagaggtc
gtggtggaggaggatgacgcagaccaagattccgacgactccgatgatgatgatgatgaa
gaggttctggagagaaaagtggcagagctggaaaagagaattgctgaagatccatacagc
tatgatgaccatattcaacttattcaggccttgtggggcctgtcagagcttgatcgctgg
cgaaatgctttcgatcgcctgcaacagatgtccatgctaaaggcagagcactggctgttg
cggatccaaacagaggagaccctggctcactctgctgaggctaaggagcagttggtcgag
ttgttccgacaagcttcattggattgctactacatcccgatcctgagcgagtggtgttcg
tgggcgctgggcgtgggcggtgccgcggcggcgcgcgcgcatttggacgaggtgctccgg
cgcgccgggcccgacccgctctccgggaaactcttctgggacgccaagcacgaactcgag
aaggcccagctggagtctatgagtgccgacgaccctgactacaaggaacagcgcgagcga
gtggtgtggagcttagaggagatagtgtcgcgaccgttgctgaacggagaggaggcgtgg
ccgcatttccagcaggcggctgccgagttgcacggccaggagtatgttgacaaggttaaa
aagcaacatgatgcagcagcagaatacttgcaaaaaataacgccctacgaagaccgcttg
ctcactacagaaaatcccgaagaaaagatcaaagtgtatgaggagtacatcgataaggtg
aaggacctgtcacaagaagagaaatttgctgattgcgacagcaatggaatacttaaggtg
ctttacgaccgcgcgacatacgagtgcgtctctgcgagtctgcgcnngagtctcctgcac
gccgttcgcgcgtcactcgccgcgcactcgtcgcgcgcgacgcactcgcgcgtgctcgcc
gcgtgcacgcggcgccgcccgcgccgcgcgaccttctggctgctcactatgcagcaggct
gagcacgaggacaaaggatttgacgaggtgaaatcaatattcgagacggcgctatcaaaa
ggcatggagtcgtacaagcaggccgaggcgctgtggctgggctacttggaggcgctccgg
cgaggcaccgcgttcgataacgagcccgacgtcgagcgactgcggcggaccttccgtctg
gcgtgggactcgcttgccgagacgtggggtgaagaggcgaacgactgcgaagtgccgctg
tactgggcgcggttggagtataaccgcatgaaggaccccaaacaggggaaagagatattt
gaagagatattcaaatacggcgagaataaaacaatgtccaaatactgggaggcgttcatt
aacctcgagtcacaccgggagccctcgctatcagagaacaagctgcgcgagctgcaccgg
cgggcgttacggttcgtgacggactacccgccggccgcggctcgcctctggaccgacctg
gagcgggactacggccagctagcaacggcgcgcgagtgtgctgacctgtgtgaggccaaa
ctaaaagaatggcgcgagagttaccaagcaatgaaagacaaaatgacaaatcagaaaaaa
ggcaaaccaacgcagaacaagaaatctaaaatcgatgcgaaaaagaagaaagaagacgac
aaaccaaagaaaggaaagagaaagtctgacgagagcacagcagagagcggggctaagaga
aaaaaggacggcactatggaagttgatgagaaagcgaaagtcggggctagtggaagcttg
aagagatctcacgatgaggacggtggcggtgatgcagacacagacaagaagaggcaacgg
acagccagcgcggagagcgcgggccgcgccggcaaccgcgaggcttgcacgctcttcgtc
agcaacttagatttcaaagtgaacgagcagaatctccgcgcgaagctatcagagttcggc
gaggtggcgtcaatgcgagtgcgcgccggtgtcaaacaattcggcggttccatctgctac
tgtcaatacacaacgccggaagcggtagacgaggcggtaaagcacgacaggacgcctctc
gacgggcggcccatgttcctctcacgctactccgcctctaaatcaaaaggggcgttcaaa
tacgcgaccacaacggaaaaaaataaactattcgtccggaaccttccttattcgcattgc
acaaaggagcacctaactgaaatatttgataagttcggcaagctgagcgacgtcagggtt
gtcacgtttaaagacggcaaaccaaaaggtctagcatacatagactacgaagatgaagcg
tcagccgccgcagcggtcgaaaagacaaacggtctgcttgtaggcgacagaaccatagac
gtggcggtgagtgcaccgccgccgcgcggggatgcgccgggacccagcctcgggcagccc
aagcgggacgcgggagggggcatgcgacgaacgcaactcagcagtttcatcccaagcgtg
ctccaaaagccgtccacttccaaagcacccgccaacggctcccacaacggcgattcgcga
ccgctaagcaacagcgacttcagatccctgctgcttaagaaatag
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