Choristoneura fumiferana (eastern spruce budworm): 141432007
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Entry
141432007 CDS
T11020
Symbol
Prp40
Name
(RefSeq) pre-mRNA processing factor 40
KO
K12821
pre-mRNA-processing factor 40
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141432007 (Prp40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141432007 (Prp40)
Spliceosome [BR:
cfum03041
]
Complex A
U1 snRNP components
U1 related factors
141432007 (Prp40)
Complex B
141432007 (Prp40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
RhoGAP-FF1
RYYR-CCHC
Motif
Other DBs
NCBI-GeneID:
141432007
NCBI-ProteinID:
XP_073949464
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Position
10:complement(8101142..8118346)
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AA seq
823 aa
AA seq
DB search
MDAASTGTSSPGMMGAPLLPPPMMAGIPPPMPPQVAMPPVPGIAPAMAAMPPPMGFPPMI
PPFSMPPPGFPPFKPDLGAPAPEITPMSNQTSPWSEHKAPDGRTYYYNSVSKQSLWEKPD
DLKTPAEKLLSACVWKEYTTDAGRLYYHNIETKESSWVVPPELQEIKDKIAAEEAAHMAL
NGDLPPGEVPLPGSPATPAGGSSALDEAMAKTLASIDPALVSSIPIPEDIEPEDVASPAQ
ALDIAEPVAEPQYKDKKEAIEAFKELLKEKNISSNATWEQCVKIISKDPRYTAFKKLNER
KQAFNAYKTQKVKDEREELRLKTKKNRENLEEFLLSCDRVTSMTKYYKCDDMFSNLEIWR
CVPDADRKDIFEDCIFTITKREKEEAKALKKRNMKMLAQVLENMNEITYSSTWSEAQVLL
LENSAFKNDVSLLGMDKEDALIVFEQHIKNLESEYAQEKEQLKKRSKRQQRKNRDNFLAL
LDGLHEEGKLTSMSLWVELYPVISADMRFSAMLGQQGSTPLDLFKFYVENLKARFHDEKK
VIKEILKEKDFEVKPDTTFEEFATIVCEDSKSAALDAGNVKLTYNALLEKAEARNKEKMK
EESKAQKKIESTFKWALSEANVDHQLPWAEVKEKLDLDAPEFAAVPEEEDRIRIYKDFQH
EQEESCMHYHHPKPRKAKRSKKKKRSHSASPSKSRSRSGTPAPARSPSPAASHATWTSDE
ARKHKKSKKKHRKHDPAPRSPTPEEGGISEASPPRHKRRGKRSAPPSPEPAPLDEPAFKP
KKKKDKRDKKERSAAASSTAWSDAELESRRAALLAQLHEHEAD
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagcgagcactggcacgagctcgccgggaatgatgggtgcgccgttactgccc
ccaccgatgatggccggaataccgccgccgatgcctccgcaagtggccatgcctcccgta
cccggcatagcgccggctatggctgctatgcctccacctatggggtttccacccatgata
ccgccattctcgatgccgccgccaggatttccaccctttaagcccgatctaggtgctcca
gcacctgaaattacgcctatgtctaaccaaaccagcccctggtcggagcacaaagcacct
gatggccgtacttactattataactcggtgtccaaacaaagcctttgggagaagcctgat
gatttgaaaacacctgctgaaaagctgctatcggcgtgtgtgtggaaagagtacacaact
gatgctgggcgtctgtactaccacaacatcgagactaaagaatcaagttgggtggtacca
cctgagttacaagaaatcaaagataaaattgcagcagaagaggcagcacatatggctctg
aatggggatctgcctccaggcgaggttccactgccgggatcgccggcaacgcccgctggt
ggctcttcagcgttggatgaagccatggccaaaactctggcatctattgaccctgccctt
gtcagttctattccgataccagaagatattgaaccagaagatgtagcatcaccagcacaa
gctcttgatatagctgaacctgtagcggaacctcaatataaagacaagaaagaggctatt
gaggcattcaaggaactcctcaaagagaagaatatttcatcaaatgcaacttgggaacag
tgtgtgaagattatctcaaaagatcctcgttacactgcttttaagaaactcaacgagaga
aagcaagcttttaatgcatataaaacgcaaaaagttaaagatgagagagaagaattaagg
ttaaaaacaaagaagaaccgagaaaatttggaagaattcttgctgagttgtgaccgcgtc
acgtcgatgactaaatattacaaatgtgacgatatgttcagtaaccttgagatatggcgc
tgcgtacctgatgcggatcgaaaagatatcttcgaagattgcatatttacaattaccaaa
cgtgaaaaagaagaggccaaggcactcaaaaaaagaaacatgaaaatgttagcacaggtc
ttagaaaatatgaatgaaatcacgtatagcagtacctggagtgaagcgcaagttttgctt
cttgagaattcagcattcaaaaacgatgtcagtttgcttggcatggacaaagaagatgca
ctcattgtatttgaacaacacataaaaaatttggagagtgaatacgctcaagagaaagag
cagctcaaaaagcgaagtaagcggcaacagagaaagaatagagacaactttttggcgtta
ttagacggcctacacgaagaaggcaaattgacatcgatgtctttatgggttgagctttac
ccggttatctcagctgatatgcggttttctgccatgcttggtcaacaagggtcaacccca
ttagacctcttcaaattctacgtggaaaacctaaaagcgcggttccatgatgagaagaag
gtgataaaagagatcctgaaagagaaagacttcgaagtgaagccagatactacatttgaa
gagtttgccactatcgtgtgcgaggatagcaagtcggcggcactagatgcaggcaatgtc
aagcttacgtacaacgcgctgctggaaaaggctgaagcgagaaacaaggaaaagatgaag
gaggagtcgaaagcacagaagaaaattgagagcaccttcaaatgggcgcttagcgaagcc
aacgtggaccaccagctgccgtgggctgaagtcaaagagaagctcgacttggatgcaccg
gagtttgcggccgtgcctgaggaagaggacaggatcaggatatacaaagatttccaacat
gaacaagaggaaagctgcatgcactaccaccaccccaagcccagaaaggcgaaacgatcc
aagaagaaaaagcgttcacattccgcctcaccgtcgaagtcgcggtcgcggtcgggcacg
ccggcgccggcgcggtcgccgtcgcccgcggccagccacgccacctggacctcggacgag
gcccgcaagcacaagaagtctaagaagaagcaccgcaagcacgatcccgcgccccgttcg
ccgacgccggaagaaggcggcatctcggaggcgtcgccgccgcggcacaagcggcgcggc
aagcgcagcgcgccccccagccccgagcccgcgcccctcgatgagcccgccttcaagccc
aagaagaagaaagacaaacgagacaagaaagagaggtcagcggcagcgagttcgacagca
tggagcgatgcggagctagagtcacggcgcgcggcgctgctcgcccaattacatgagcac
gaagccgactga
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