Choristoneura fumiferana (eastern spruce budworm): 141432692
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Entry
141432692 CDS
T11020
Symbol
tst
Name
(RefSeq) superkiller complex helicase subunit twister
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141432692 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141432692 (tst)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141432692 (tst)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141432692 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
141432692 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
141432692
NCBI-ProteinID:
XP_073950506
LinkDB
All DBs
Position
11:complement(8536528..8553148)
Genome browser
AA seq
1252 aa
AA seq
DB search
MSLDSEDEFSDFKPPPIFEDLNERVKEYLLKPERLSIHRWERSQTHWHRQTDVDSLFNID
DEDVDPSSTLEVIRDPLTGEIIGLEEISIPVEDDDDSLSMSRAPLPPSLATRGATTQSPF
LPAGFEEELQKMLDEAAQYDEININLDDEEMGKFLGEELLTIPPGCKEGVLFAEDGVTVL
NGPEQSKEETKTDENHEDIDIQARINLEEVIDSNTHLVGLWKDEDEPQPKSKLKKPQETD
TTDNDNFLESTIIQPPVELPEIPILNITSSTARTGVTCTEWAEMIDVSLPVPDFREKIKD
MAHSYPFELDNFQKQAILKLEEGHHVFVAAHTSAGKTVVAEYAIAMSRRNCTRAIYTSPI
KALSNQKYNDFNKMFGEVGLLTGDLQINATAPCLVMTTEILRSMLYCGSDVTRDLEFVIF
DEVHYINNAERGHVWEEVLILLPAHVSIVMLSATVPNTLQFADWVGRTKKRRVYVVSTPK
RPVPLCHYLYTGSGGKSKNERFLVIDQDGNFRLRGYNDAVEAKKARENDFKKHFGPKGGK
QFMNPKAEQTMWVAFIDHLRQNDKLPVVAFTLSRNRCDQNADNLMSVDLTTAHEKGHIRN
FFQRCLQRLKEPDRKLPQVLRLQRVLENGIGVHHSGILPLLKEIVEMLFQSGHVKILFAT
ETFAMGVNMPARTVVFDEITKFDGVERRILAPAEYIQMAGRAGRRGLDDTGTVIILCKDG
VPDQVKLKGMMLGIPQKLSSQFRLTYAMILSLLRVATVSVEGMMQRSFREFDQILKSDSY
KKQLQIAEKEFTEKCSTPLPPHLAPLAVFYDTAATYIDVLNDIMPILLNQPKVLKELLPG
KILIVSAGPFINQLGIYLNNTGPRQTPFKVLVLNTVVQDTAKYNFDIDENWYRMLSFSAL
YNGIGTEESTMDHTILCLAPKNIVAVTKTNLKIDPSIIIKDWEQRQMPRFKDAPIGSSCA
SAIQELARVSHAVKTGATKLEHVNLTQSLAVSTGEILQLLDSMSRLTNELATLEKSTDIA
NFKSEFAIVYERKQTERKRDKYRRLLSFENLALYPDYQRRLMVLRELSYIDEHDSVILKG
RVACGMGTNELIIAELVFRNVFTDKTPAEIAALLSCFVFQARTSIEPVLTDKLAQGVKAI
EQIDQELTSVESKYLVGQFEGQAERLNFGLVKVVYEWALEKPFAEIMDLTDVQEGIIVRC
IQQLLELLIDVKDAAVVIGDPKLQAKMVEASSAIKRDIVFAASLYTTQKESV
NT seq
3759 nt
NT seq
+upstream
nt +downstream
nt
atgtctttagattctgaagatgagttttcagacttcaagccgccgcctatattcgaagac
ctaaatgaacgagtgaaggaatatttgctgaaaccggaaagattgtcgattcatagatgg
gaaagatcgcagactcactggcaccggcagaccgacgtcgattcgttattcaatatcgat
gatgaggatgttgaccctagttctactttagaggtcatcagagaccctttgacaggtgaa
attattggtttggaggagatcagcatacccgttgaagatgatgatgacagtctctccatg
tcccgtgctccgctgcctcccagcttggccactcgaggggcgaccacacagagcccgttc
ctacctgcaggttttgaggaggaactgcaaaaaatgttggatgaagcagcacagtatgat
gagataaacattaatctggatgatgaagaaatggggaagtttttgggtgaagagcttcta
actatacctcctggctgcaaagaaggtgtcctgtttgctgaagacggagtcactgtacta
aatggtccagaacagagtaaagaagaaaccaaaactgatgaaaaccatgaagacattgat
atacaggctagaataaacttagaagaggttatagacagtaacacacatttagtaggccta
tggaaagatgaggatgaaccccaaccaaagtccaaactaaaaaagccacaggaaacagat
accacagacaatgataacttccttgagagcacaatcatacagccaccggtagagttacca
gaaattccaattttgaacatcactagttccacagcgagaacaggggttacttgcaccgag
tgggcggaaatgattgatgtttctctaccggtgcctgactttagagagaagattaaggac
atggcacattcttatccgtttgaattagataatttccagaagcaggccattttaaaattg
gaagaaggtcatcatgtatttgtcgctgcgcacacgtctgccggtaaaactgtggtcgct
gaatacgccatcgcaatgtccagaagaaactgcaccagagcgatatacacgtctcccatc
aaggcgttatctaaccagaagtataacgatttcaacaaaatgtttggcgaagtaggtctg
ctcaccggcgacttacaaataaacgccactgctccctgcttggttatgacgacggagatc
ctccggtccatgttatactgcggctctgacgtcactagagacttggagttcgtaatcttc
gatgaagtgcattatattaataatgctgagcgtggccacgtatgggaagaagttttaata
ttgcttcccgcgcatgtcagcatagttatgttgagtgcaactgtacctaacacccttcag
ttcgctgattgggtaggacgtacaaagaagcgtagagtttacgtcgtttctacgcccaaa
cggccagtgccgctgtgccattacttgtacacaggttccggcggtaaatcaaagaacgaa
aggttcctagtgatagaccaagacggcaacttcaggcttagagggtacaacgatgccgta
gaagctaagaaggccagagaaaacgacttcaagaaacattttggaccaaaaggcggcaaa
cagtttatgaatccaaaagcagaacaaactatgtgggtggcctttattgatcatttgaga
caaaatgacaagcttccggttgttgccttcactttatctagaaacaggtgcgatcagaac
gcggacaatctgatgtccgtggacttgacaacggctcatgagaagggtcacattcgaaac
ttcttccaaagatgtctgcagcggctcaaggaaccggatagaaagttgccacaggtgctc
agattgcaaagagtactcgaaaatggtattggagttcatcacagcggtattctgccactt
ctcaaagaaatcgttgaaatgcttttccagtctggtcacgtcaagatcctgttcgcgaca
gaaacgtttgcgatgggcgtgaacatgccggctcgaacagtggtgttcgacgagatcacc
aagtttgatggcgtcgagaggcggatattggcgccggcagagtatattcagatggcggga
cgcgcagggaggcgaggtctcgatgatacgggcacggtgattattctatgtaaagacgga
gttcccgaccaggtgaagcttaaaggcatgatgctgggcataccgcagaaactgtcgtcc
cagtttagactcacctatgctatgatactgagtctcttgcgagtggccacagtgtccgtc
gaaggtatgatgcaacgttcattccgtgagttcgaccaaatactgaaatcggacagctac
aagaaacaactgcaaatcgcggaaaaggaattcacagaaaagtgcagtacaccgctgcct
ccacacttggcgccattagcggtattctatgacacagcagcaacgtatatcgatgtgctg
aatgatatcatgccgatactgttgaaccagcctaaggtgctcaaggaattgttgccggga
aagattttgattgtatcggcgggaccttttattaatcaacttgggatatatctgaataat
acaggtcctcgtcaaactccattcaaggttctagttctgaacacggtggtccaagacaca
gctaaatacaacttcgatatcgatgaaaactggtacaggatgttaagcttctctgctctc
tacaacggcataggtaccgaagaaagcacaatggaccacaccatcttgtgcttagcacca
aagaacatagtagcagttactaagaccaatcttaaaattgatccaagtattataataaag
gactgggagcaaagacagatgccgcgattcaaagacgccccaatcggatcaagctgtgca
agcgcaatacaagagttggctcgcgtctcgcacgccgtcaaaaccggcgccaccaagctc
gagcacgtcaacttgacgcagtcgctggccgtgtctacgggggagatactgcagctgttg
gatagcatgagcaggttaacgaacgagctagcgaccctcgaaaaatctacagacatagcg
aactttaaatccgaattcgcaatagtctatgaaagaaaacagactgaacgcaaacgagac
aaatatcgtcgtctgctctcattcgaaaacttagctctctacccggactaccaaagacgc
cttatggttttaagagagttaagctacatcgacgaacacgacagtgtcatcttgaaaggc
agagtcgcctgcggtatggggaccaatgaacttattatagctgaattggtgtttcgaaac
gtgtttacggataaaacgccggcggaaatagcggcgctgctcagttgttttgtgttccaa
gccaggacttctatagagccggtgctgactgacaaactggcgcaaggggtgaaggctatt
gagcagatcgaccaggagttgacgtctgtggagtcgaagtatttggtgggtcaatttgaa
ggccaagcagagagactcaatttcggtttggtcaaagtggtctacgaatgggcgcttgaa
aagccctttgccgaaatcatggatctcactgacgtgcaggaaggcatcattgttagatgt
atacagcaactgttagagttgctcatagacgtgaaggatgcagcagtggtaattggggac
cccaagctccaagccaagatggtggaagcttcgtcagcgatcaagcgagacatcgtcttt
gcggcgagtctttacaccacccagaaagaatctgtatag
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