Choristoneura fumiferana (eastern spruce budworm): 141432875
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Entry
141432875 CDS
T11020
Symbol
Cpsf100
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141432875 (Cpsf100)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141432875 (Cpsf100)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
141432875 (Cpsf100)
U7-dependent histone pre-mRNA processing factors
141432875 (Cpsf100)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
Lactamase_B
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-GeneID:
141432875
NCBI-ProteinID:
XP_073950786
LinkDB
All DBs
Position
11:complement(14208714..14221602)
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AA seq
730 aa
AA seq
DB search
MTSIIKVHCVSGAGDETPPCYVLQIDEFKFLLDCGWDEKFDMEFIKELKRHVNSIDAVLL
SHSDPLHLGALPYAVGKLGLNCPIYATLPVYKMGQMFMYDLYQAHKNVSEFDLFTLDDVD
AVFDSIVQLKYNQSVDMKGKGLGLRITPLPAGHSLGGTIWRIAAPGEEDIVYAPDFNHKK
ERHLNGCEIERIMRPSLLLLGAMNADYVQPRRRLRDEKLMTTILSTLRGGGSVLVCTDTA
GRVLELAHMLDQLWRNKDSGLVAYTLLLLSNVSYNVVGFAKSQIEWMSDKLSRAFEGARS
NPFALRHLQLCHSAADVARSPGPKVVLASFPDLECGFARDLFLQWAPHQQNSIVLTARTS
PGTLARDLIENGGDRTIELTVRRRVRLEGAELDEFLIQQRARVHSAPKEEVAGLSSDSDS
DGELEMWVVTGRHDIPVRHDARPAGCFKANKRHHAMYPAHDERARHDDYGEVIRPEDYRL
AEIVDAEGEIRDVPPAPPPKEEVEEEITEIPSKCVTSVRQVAIRASVQYIELEGRCDGES
LLRVVTQAKPRAIVGLRANEGALTTLRKYCEMEGIEKIFTPTRGEVIDATTESHIYQVKL
TDALMSGLAWRAAGDAELAWLSGVVAPRARPREPDTTEEEMAEDVVMSLEPCKSGRAHAA
ALINAVRLSELRAALARHGLAAEFVGGALECCHGTLAIRRLENGRVALEGVLSEEYYKVR
ELLYDQFAIV
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgatcatcaaagttcactgcgtctcgggggctggtgatgagactccgccatgc
tacgtgctgcagatagacgaattcaaattccttctcgactgtggatgggacgagaaattc
gatatggagttcattaaggaactaaagagacatgtaaatagcatagatgcagttctcctc
tcacattcagaccctctgcacctcggagccttgccttatgcagtcggcaagctcggcctc
aactgcccaatctatgctactctgccagtctacaagatggggcagatgttcatgtacgat
ctctaccaagcacacaaaaatgtgtcggagtttgatctgttcacattggacgatgtggat
gccgtgtttgatagcatcgtacagctgaagtacaatcagagtgttgatatgaaaggtaaa
ggcttaggcctccggatcacaccattaccagctggtcactcgcttggtggcaccatctgg
cgaatcgcagcccctggtgaggaagacatagtgtatgcaccggacttcaaccataagaag
gagcggcatctcaatggctgcgagatagagaggatcatgagaccctcgttgctgcttctt
ggagctatgaatgctgattatgtgcaaccaaggcggaggttaagagatgaaaaattgatg
acaacaattctcagtaccctacgaggcggaggcagtgtcctagtgtgtacggacacagca
ggcagggtactagaattagctcacatgttggaccaactgtggaggaacaaggactcggga
ctggtcgcgtatacgttgttactgttgtccaacgtcagctataatgttgtggggttcgct
aagtctcagatagagtggatgagcgacaagctctcgcgagcgttcgaaggcgcccgctcc
aacccgttcgccctgcggcacctccagctgtgccactcggcggccgacgtggcgcgctcg
ccgggccccaaggtcgtgctggcttccttcccagacctggagtgcggcttcgccagagac
ctgttcttacaatgggcgccccatcagcagaactctatcgtgctcactgccagaacatcc
cccgggacgctggcgcgtgacctgatcgagaacggcggcgaccgcaccatagagctgacg
gtgcggcggcgcgtgcgcctcgagggcgcagaactagatgagttcctgatacagcagcgc
gcgcgcgtccacagcgcgcccaaggaggaggtggccgggctctcctccgactcggactcg
gacggcgagctggagatgtgggtggtgacaggccggcacgacatcccggtgcggcacgac
gcgcgccccgccggctgcttcaaggccaacaagcggcaccacgccatgtaccccgcgcac
gacgagcgcgccaggcatgatgactacggggaggtcatacggccggaagactacaggtta
gcggagatagtggacgcagagggggagattcgcgacgtgccgcccgcgccgccgccaaag
gaagaagtcgaagaggaaataacggagatccccagcaagtgcgtgacatcggtccggcaa
gtcgccataagggcatccgtccagtacatcgagctggagggccgctgcgacggcgagagc
ttgctgcgcgtcgtgacgcaggccaagccgcgggccatcgtcgggctgcgcgccaacgag
ggggcgctgacgacgctcaggaagtactgcgaaatggagggcatagagaagatcttcacg
ccgacgcgcggagaagtcatcgacgcgaccacagagtctcatatctaccaggtgaagctg
acggacgcgctaatgtcgggtctggcttggcgcgcggccggcgacgccgagctggcctgg
ctgtcgggcgtggtggcgccgcgcgcgaggcccagggaacccgacaccactgaagaagag
atggcggaagacgtagtgatgtccctggagccgtgtaagagcgggcgtgcgcacgcggcg
gcgctgatcaacgcagtgcgtctgtccgagctgcgcgcggcgctcgcgcggcacgggctc
gccgccgagttcgtggggggcgcattggagtgctgccacggaacgctcgccattcgacga
ttggaaaatggccgcgtggcgttggaaggcgtgctgtctgaagagtattataaagtgcga
gaactcttgtacgaccagttcgctatagtgtag
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