Choristoneura fumiferana (eastern spruce budworm): 141433364
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Entry
141433364 CDS
T11020
Symbol
Srrm1
Name
(RefSeq) serine-arginine repetitive matrix 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03013
Nucleocytoplasmic transport
cfum03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
141433364 (Srrm1)
Spliceosome [BR:
cfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
141433364 (Srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
141433364
NCBI-ProteinID:
XP_073951467
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All DBs
Position
12:complement(12470275..12489787)
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AA seq
954 aa
AA seq
DB search
MLMYTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILKM
EDDVVIDYVNNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASDNGIPES
FTQQKKEEIKKRMEEQQKDKDKDKDRRRSRSRSRTRERERRRSRDRRRSRSRSPDRSSDR
KHRNGGRDAGSPRRSRRRSRDKSSQTKTSHADDVKVPEPKENGKSPEKKEVTEAEKEEEN
HNTTTEAATEETTDTSVKEVKAEEDSRKSRSASPAKSTSAKVAEEKKEEKVHRSSSDRRS
SSASSRGSAKKRASHKKRQYRSNRDSSGSVSPRRSSRRDRSKSRHRSSRRLSVDRRDRDR
ERERERDRERERRRRERERRERSRERRRSLERRRRTRSRSRRRSRDRSRDRRRSRSRRRS
RSRRRSGRGSRERRSKDRRSRDRRSPRRSRERSRDKKSRDRIPKDRRSRDRKSRERRSSD
IIKERLEKSVSIPRKENLDLKLLKKSSERISIPRERSKERVVSSSSRESSVANEKSASQN
DSQVKPANSSDEEDREDFIPVPTLREYSRSLSRTPSPFLRKHEIETAKKSERSGDDASGK
EQIEEESKPQDTKKLKRKTHQSESESESSEEVAKSKTKAKIKKKEKTSSKRSKKSKKDTS
SSDSDSEESSSSDSEEDRKKKSKKNAKKKLAKKSRKKKSRSSSSESSSEEEVKHKSSKSK
QKNVPDDSDADKKSSKKRKESIERPKTDKVEVKVKSKKLDNSEESRDDSSDSDAKSNKKK
VTKRDSSSSPDKEVRRSKKMESAKEKAVSPEVAKAKKPEDKQSKSKHIEHVESKTKSRDD
EKKAKKREKEESSSDSDQVSKKKARKKVSESESDSDSDEPKKSKRAKKHKKHSKKHKKHK
KHKKSSKKKDDSSDSEEAEEEEEEGKVNNEDLEKKLRERALKSMKKQTSASGSD
NT seq
2865 nt
NT seq
+upstream
nt +downstream
nt
atgctgatgtacacgggaacaagtacagagcaggacacgcgcttcagcgacaaggagaag
aaactgatgaagcagatgaagtttggagattgtttaacccaacaggtggacatgtccaag
gtaaagctggatgttctgaagccatggatcacccagaagatcaccgagatcctgaaaatg
gaagacgacgtggtcatcgactacgttaacaaccagctggaggagaagttcccctgtcct
aaaaagatgcagataaatctgacgggttttctgaacggcaagaatgcgcgactgttcatg
ggcgagctgtgggagcttctgcttagcgcgcaagccagcgacaacggaatcccagagtcc
ttcacgcagcagaagaaagaagagatcaaaaagcgtatggaagaacaacagaaagacaag
gacaaggacaaggatcgcaggcggtcccgttcgcggtcgcgaacccgcgagcgcgagcgt
cgtcgttcccgagatcgacgcaggtcgcgctcaaggtcgccagatcgttcttctgacagg
aagcatcgcaatggaggcagggacgcaggcagccccaggcgttcgaggaggcgcagtcgc
gacaagagcagccaaacgaagacatcgcatgctgatgatgtaaaggttcctgaaccgaaa
gaaaacggcaagtctccagagaaaaaagaagtcacggaagccgaaaaggaagaagagaac
cacaacaccaccactgaggcagccacagaggagaccacagataccagtgtcaaggaggtg
aaagctgaagaagatagtcgcaaatccagatcagcttcacctgccaaatctacgagtgct
aaagttgcagaagaaaagaaagaagagaaagtccaccgatcatctagtgataggcgttcc
tcgtccgcttcatcccgtgggagcgcaaagaagcgcgcgtcacataagaagcgccagtac
cgctccaaccgagactcgtccggcagtgttagtcctcggcgaagctctcgtagagacaga
agcaagtctcgtcatcgaagcagccgtcggctgtctgtggaccggcgcgacagagaccgc
gaacgcgagcgcgagagagaccgcgagagggagcgtcggcgccgcgagcgggaacgaagg
gagaggtcgcgagaacgtcgccgatcgcttgaaaggcgcaggcgtacgcgttcacgctct
cgacgacgttcaagggacaggtctcgcgatcgccggcgctctcgttcgcggcgccgctcg
cgctcccgccgccgctcgggccgtggctcgcgcgaacgccgctccaaagaccgccgctcc
agggatcgtcgctcgcctagacgctcgagggaacggtccagggacaaaaagtccagagat
cgtataccgaaggaccgaagatccagagacaggaagtcgcgagagagaaggtcaagcgac
atcatcaaggagcgattggagaaatccgtgtcaatcccgagaaaagaaaatctcgatttg
aaattgcttaagaaatcctcggaaagaatttccattccgcgagagcgctccaaagagaga
gtcgtatctagttctagtagggagtcttcagttgctaatgaaaagtctgcttcacaaaat
gactctcaggttaaacctgctaactcttccgacgaagaagacagggaagattttattcct
gttcctactttgcgcgagtattctaggagcctttctagaacaccatcaccattcttaaga
aagcacgagattgagactgccaaaaagtcggaaagatccggagatgacgcatctggcaaa
gagcaaattgaagaggaatcaaagccccaagatacaaagaaactgaaaaggaagactcac
cagtcagagtctgaaagtgaaagcagcgaggaagtagctaaatctaagactaaagctaaa
attaagaagaaggaaaaaacaagttctaaacggtctaaaaaatctaaaaaagatacatcg
tccagtgacagtgattcagaggagtcgtcttcgagtgactctgaagaagaccgtaaaaaa
aaaagcaaaaagaacgccaaaaaaaagttggccaagaaatctagaaagaagaagagtcgc
tcttcgagctccgaatccagttctgaggaagaagtaaagcataagagttctaaatccaag
caaaagaacgttccagatgattcagatgctgataaaaagtcaagtaagaagcgtaaagag
agtattgaacgtccgaagacggataaagttgaagttaaggtaaagtcgaaaaaacttgat
aattcagaagaatctcgtgatgattcatctgacagtgatgccaagtctaacaaaaagaag
gttactaaacgcgactcttcaagctcacccgataaagaagtgcgacgcagcaagaagatg
gagtcagctaaagagaaggctgtttctcctgaggttgccaaggctaagaaacctgaagac
aaacagtctaaatctaaacatattgaacatgtagaatccaaaactaaatctcgtgatgat
gaaaaaaaggccaagaaacgcgaaaaagaagaatcgtcatctgacagtgatcaagtttct
aagaaaaaagcgagaaagaaggtttcagagtccgagtctgactctgacagtgatgagccg
aaaaagtctaagagagccaagaaacacaaaaagcattctaagaaacataagaaacataaa
aaacataagaagtcatctaagaagaaggatgactcctctgacagcgaggaggcagaggaa
gaggaggaagaaggaaaggtcaacaacgaggatctcgagaaaaaacttcgcgaaagagcc
ttaaagtcaatgaaaaagcaaacaagtgcgtctggttccgattaa
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