Choristoneura fumiferana (eastern spruce budworm): 141434073
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Entry
141434073 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
141434073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141434073
03036 Chromosome and associated proteins [BR:
cfum03036
]
141434073
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
141434073
Coactivators
SAGA/TFTC/STAGA complex
141434073
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
141434073
STAGA complex
141434073
TFTC complex
141434073
SAGA complex
141434073
SLIK complex
141434073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML
TFIID_NTD2
Beta-prop_DCAF4
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SPT8
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
WDR90_beta-prop_4th
WD40_RFWD3
Ge1_WD40
WD40_like
Motif
Other DBs
NCBI-GeneID:
141434073
NCBI-ProteinID:
XP_073952432
LinkDB
All DBs
Position
13:complement(11823314..11834732)
Genome browser
AA seq
654 aa
AA seq
DB search
MSLMKKTRNDAVKAAVTSYLERRNYPDTDIFNNNNSISQSVEQMAVSTIVQCEASRANSI
LFSCINNDPGHYDVQYTRLLNFIKEIKVENVKNELFGLLTPLLCHMYLEMLRGGHGSAAQ
MFLKRHSVSLPQKDLSYHQPIDGNLPSALYRPNSLEQLFNSLQNGTIDNETPEKDFMNQL
LDDIGSIYTLQEVETRPSIAAFRSCKYDIYLSPSALNMLKAYLAKNSHILLIQILQTWFH
IDINSDNKKKDSEDEDDLDEGMNIRTNSEEKVTSNDIFSKCNGHAEYQSVDKELRDLQDA
IKGVRESTAPLKLYKIAAPDTYLVCAKTDPGCNLLCGGFSNSEIRLWDLGQNNVKRKINC
NISEMELACNVPPEPEAAVDHHNLQIGTGLPLRGHSGPVQAVSVLSREELVLSASHDCSM
RAWRLSDYSCASIYRGHNYPIWCMDVSKNGLFIVTGSHDKTAKLWSLDRTFPVRVFVGHM
SDVTCVKFHPNEAYIATGGADRSVRLWAVCDARLMRVLCGHRGAVRALAFAPSGSCLASA
GDDKKIKVWDLAACTCIHEYRGHHGKVTALDWSAVGRPTLTNRVQPDPNDPSADNALLCS
AGMDGIVKVVWDNHCKNKQASSQEVLTSTYNTKCSHLVDVQVHPNWVVAIGTKR
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttaatgaaaaaaacgagaaatgatgcggtaaaagcagctgttacatcttattta
gagcgccgtaactaccctgatactgacatttttaacaacaacaattcaattagccaaagt
gttgaacaaatggccgtatctacgatagttcagtgcgaagcaagtcgcgccaactcgata
ttattttcttgcatcaacaacgacccaggacattatgatgtacaatacaccaggttgctc
aacttcataaaggaaataaaagttgaaaatgtaaaaaatgaactcttcgggttattgaca
cccttactctgccacatgtatctggaaatgctccgaggtggccatggcagtgcagcccaa
atgtttttgaagagacactcagtctcacttcctcaaaaagatctatcataccaccaacct
attgatggaaacctgccatcagcactgtatagaccaaatagtcttgaacaactgtttaac
tctttacaaaacggcacaattgataatgagactcctgaaaaagacttcatgaaccagcta
ctggatgatattggatcaatatacacactgcaggaagtagaaacaaggccatccattgca
gcattcagatcatgtaaatatgacatatacctgtcacctagtgcactaaacatgttaaag
gcatacttagcgaaaaatagccacatcctattaatccagattttgcagacttggttccac
atagatattaacagtgacaataaaaaaaaagattccgaagatgaagatgatcttgatgaa
ggcatgaatataagaacaaattcagaagaaaaagttacttcaaatgacatattttctaaa
tgcaatggtcatgctgaatatcagagtgtggacaaggaactgagggacttgcaagatgcc
attaaaggagtacgggagtcaacagcacctctaaaattgtataagatagctgcaccggac
acatatttggtatgtgcaaaaacagatccaggttgtaatttactctgcggtggattcagt
aactctgaaatcagattgtgggatcttggccaaaacaatgtgaagcgaaaaataaactgc
aacatatcagaaatggagctggcctgcaatgtgccgccagagcctgaggcagcagtggat
catcacaatttgcaaattggcaccggtctgccactgcggggtcactcggggcccgtccag
gcggtgagcgtgctgtcgagggaagagctggtgctgtcagcctcgcatgactgcagcatg
cgcgcatggagactgtcggattattcctgcgcctccatttatagggggcacaattacccg
atctggtgcatggacgtgtctaaaaatggactcttcattgtgactggctcccacgacaaa
acagcgaagctatggtcgctggacagaacatttccagtcagagtatttgtagggcatatg
tcagatgttacatgtgtaaaattccatccgaacgaggcatacatagcgaccggcggcgcc
gaccgcagcgtgcggttgtgggccgtttgcgacgcgcgtctcatgcgagtgctgtgcggc
caccgcggcgccgtgcgggcgctcgcattcgcgccctcgggctcctgcctagccagtgct
ggtgacgataagaagataaaagtatgggatttagcggcgtgtacctgtatacacgaatat
aggggtcaccatggtaaggtgaccgctcttgactggtctgctgtggggaggcctaccctc
acaaacagggtccagccagacccaaacgatccttcagcggacaacgcgctactgtgttcc
gccggtatggatggcatcgtcaaagtagtatgggacaaccattgtaaaaataagcaagct
tctagtcaagaagttttgacgtccacatataacacgaaatgttcgcatcttgtggatgta
caagtgcatccaaactgggtggtagccatcggaacgaaaagataa
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