Choristoneura fumiferana (eastern spruce budworm): 141434185
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Entry
141434185 CDS
T11020
Symbol
orb
Name
(RefSeq) polyadenylation element binding protein orb isoform X1
KO
K02602
cytoplasmic polyadenylation element-binding protein
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04320
Dorso-ventral axis formation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09150 Organismal Systems
09158 Development and regeneration
04320 Dorso-ventral axis formation
141434185 (orb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141434185 (orb)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
141434185 (orb)
Factors involved in mRNA localization
Trans-acting binding proteins
141434185 (orb)
mRNA cycle factors
P-body specific factors
141434185 (orb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CEBP_ZZ
RRM_7
RRM_1
ANCHR-like_BBOX
Motif
Other DBs
NCBI-GeneID:
141434185
NCBI-ProteinID:
XP_073952640
LinkDB
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Position
13:complement(17526188..17544224)
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AA seq
485 aa
AA seq
DB search
MPLLHQNTSRGGPGPSENRRSLAEILELNTTHLSETVAAPNNRCNESGNREWRWSEPGSP
EAAQTPRSLVPANCFPPRHPTAFVSYSENARPGGWDDGQGITDLVASLKALAMPAASRAH
SSLQARLSIDGFEKLVEPPWPPEQTREEAPSRADLRLLPRRASFCGVVSGCGESLRWSGT
LPARAAEPAGGWAPKVFLGGLPWDITEHALMQALRPFAPIRVEWPGREAGSGGSPRGFAY
VTFESERRVRALLAASRRDNGDWYYRVACRKRTAKEVQVIPWAVGDSSWVAGGAARLEPA
RTVFVGALHGMLSAPALAAIMDELFSGVVYAGIDTDKSKYPIGSGRVTFGNARSYVRAVA
AAYITIRTPKFTKKVQVDPYLEDSMCSVCNLQQGPYFCREPVCFRYFCRSCWAWQHAGEE
HRPLMRNSKAPAPPPARQPDLFGPAFGTPGAGTPSPATSGSTSGASELEPALPDDSDYLR
RRRLE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttcttcaccagaatacctctcgcgggggccctggtcctagcgagaaccggcga
tctctagcggagatcttggaactaaacaccacccatttgtcggagactgttgccgctcca
aacaaccgttgcaatgaaagcggcaaccgtgagtggcgctggtcggagccggggagcccc
gaggcggcacagacgcctcggtcgcttgtacccgccaactgtttcccgccgcggcaccct
acggccttcgtatcttacagcgagaacgcgcggccgggcggttgggacgacggccagggg
attacagaccttgtagcctccttaaaggccctggccatgccggcagcgtcgcgcgcgcac
tcctcgctgcaggcgcgactctccatcgacggcttcgaaaagctggtggagcccccctgg
ccgcctgagcagacccgcgaggaggctccttcgcgcgcggacctgcgtctcttgcctcgt
cgggcgtctttctgcggtgtggtgtcgggctgcggcgagtctctccgctggagcggcacg
ctgccggcgcgcgcggccgagccggcgggcggctgggcgcccaaggtgttcctgggcggg
ctgccctgggacatcacggagcacgcgctcatgcaggcgctgaggcccttcgcgcccata
cgtgtggagtggccggggcgcgaggcgggctcgggcgggtccccgcggggcttcgcttac
gtcacgttcgagagcgagcgccgtgtgcgcgcgctgcttgccgcctcgcgacgcgacaac
ggggactggtattaccgcgtggcttgccgcaaacggactgctaaggaggtgcaagtgatc
ccttgggcggtgggcgactcgtcgtgggtggcgggcggcgcggcgcgcctggagccggcg
cgcaccgtgttcgtgggcgcgctgcacggcatgctcagcgcgcccgcgctcgccgccatc
atggacgagctgttctcgggcgtggtgtatgccggcatcgacacagacaagagcaagtac
ccgatcgggtcggggcgcgtgacgttcggcaacgcgcgctcgtacgtccgtgccgtggcc
gctgcctacatcaccatccgtacgcccaagttcaccaagaaggtgcaggttgatccatac
ttggaggattcaatgtgctccgtgtgcaacctccagcagggaccttacttctgccgcgag
ccggtctgcttcagatacttctgccgctcgtgctgggcgtggcagcacgcgggcgaggag
caccggccgctcatgcggaacagcaaggcgcccgcgccgccgcctgcgcgacaaccggac
ctcttcgggcccgccttcgggacccccggagcaggaaccccctccccagcgacttccggc
agcacgtccggcgcgagcgagctggagcccgcgctgccggatgactcggattacctgcgc
cggcgccggctcgaataa
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