Choristoneura fumiferana (eastern spruce budworm): 141434202
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Entry
141434202 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein
KO
K14409
protein SMG7
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141434202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141434202
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141434202
mRNA cycle factors
Common to processing body (P body) and stress granule
141434202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
141434202
NCBI-ProteinID:
XP_073952700
LinkDB
All DBs
Position
Z:complement(1123225..1153659)
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AA seq
1117 aa
AA seq
DB search
MVLNAAVQMIREAEELKQNILKFKSDTSMLQERSLWATQQQLQKIYQKVLVLDLDYALDK
KVEQDLWNVGFKQQIEALQNISKDRKNPLRSEGQAMLSWVLQAAAGFYLCLLHQICTAFK
LDLPFRRRASLLGWVEGWSPGAAAAGARLPPPAAXRYICQHCLVHLGDLSRYRQQPRVAY
TFYRHALVVSTHSGQPYNQLGLLARRRGRRLGALYWHVRAVLVRSPFPPAPNNLLRTLQQ
HAGHVVRDPPVLPGMRRASPPPAPPAPRLDSHSHVTELMRALYMIHTLENLEFASTLVHS
LNSSLTSLVATDCFESMTLIKMVCVIIWLVHSSTEEQTASEGSLSGAEATAAALSQTLAA
GALLALLLPAHAAETPPARALPALKVFLQWLVLYPQLLRSAPFVGRPQLWHALAHTLNKL
KGDSDDKYDTVPLPEDEELHGFQPLEESFKDLKFLNHATWDTYGRRVPDVDEENEGDEEV
APPSVVSPASLGDEPELAAGVRARRLVALGKQLADLRPQQFGYTTEDGVVTFAALCVGGH
ELSLALAELQASATPHGRDSEQDSEDDAPLPPPIVISEADFREKVREKRVGILKPQGSLE
RAREERALATTDDQLYDASEDCAVGGDRREIRRPRVNIAMAAILRKQEESCKQVKFRTPP
PTLDTSEADTTQRVDSTIDRPKVKQQKSLADIPVGRKTGGILALKDKSGYPHLVNNASEV
TIKKPEELPQRDPKVIQPPSHTAKRDGPQAKWHQPYEIRPNHRNYGLNNAGIRYKPNYEA
PATATSQNQSIRLPVVNPKEIDVRSAALQRQSGRNDYPQRPNYPVGGDKKSFMDDLPPRF
ANQRWNQEQDNKFRDDFRTKQLNANMFSTPPPNWLNTMPMQLPQQLPMQSQLMRPQVPPQ
LSMPPPPLPDSYSPQSWWNRPPYNAPPTRADAITSQTMAAMQQIYNSQLSSNVLMNMTSH
GQLPMPSSESGFVRQSPIGQLPPRHISPPNFSPYPVPALPYPNVYDYPQYQSRDYLGETR
YPAQPAQEVGLDLTIRKPTPDFVPFHARRMEEGALERAMDEALNASPLNQSPKSDEHEEA
ESPAEDPGTYSLFSAAPGACDWGPMAQGQQGRGNANV
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggttctgaatgccgctgtgcagatgattagagaggcggaggagctaaagcaaaatatt
ttaaaattcaaaagtgacacatccatgttacaagaacgcagtctttgggcgacgcagcaa
cagctacagaagatttaccaaaaagtgctagttttggatttagattatgcattagacaag
aaagtggagcaagacttgtggaatgtaggcttcaagcaacagattgaagcgctgcagaac
atctccaaagacagaaagaatccgctgcggagtgaggggcaggcgatgctttcgtgggta
ctgcaagcggccgccgggttctacctctgtctgttgcatcagatatgcaccgcgttcaag
ctggacctaccgttcagacggcgcgcctccctgctgggctgggtggagggctggagcccc
ggcgcggcggccgcgggcgcccggctgccgccgccggccgcgngccgctacatctgccag
cactgtctggtgcacctcggggacttgtcgcggtacaggcagcagccaagggtagcttac
accttttacagacacgctctggtggtatccacgcactccggccagccttacaaccagctc
gggctgctggcgcggcggcgcggccgccggctgggtgccctctactggcacgtgcgtgcc
gtgctagtccgctcgcccttcccccccgcgcctaacaatctgctgcgaaccctgcagcag
catgctggacatgtcgtccgcgacccgccggtgctgccgggcatgcgtcgcgcgtcgccc
ccgcccgcgccgcccgcgccgcgtctcgactcccattcgcacgtgacggaacttatgcgt
gcgctctacatgatacacacgctggagaatttggagttcgctagcacgttggtgcattca
cttaattcttcgctgacttcgctcgtcgctacggactgctttgaatctatgacgcttata
aagatggtgtgcgtgattatctggctggtgcactcttcgacggaggagcagacggcgagc
gagggctcgctcagcggcgcggaggcgacggcggcggcgctcagccagacgctggcggcc
ggcgcgctgctggcgctgctgctgccggcgcacgcggcggagacgccgccggcgcgcgcg
ctgcccgcactgaaagtgttcctgcaatggttggtcctatacccgcagctgctccgctcg
gcgccgttcgtcgggcggccgcagctctggcacgctctcgctcacacactcaacaagttg
aaaggagacagcgatgacaaatatgacacggtgccgctgccagaggacgaggagctccac
ggcttccaacccctggaggagtcgttcaaggaccttaagttcctcaaccatgccacttgg
gacacgtacgggcgccgcgtgcccgatgtggacgaagagaacgagggcgacgaggaagta
gcccccccgtcggtggtgtcgccggcgtcgctcggcgacgagccggagctggcggccggc
gtgcgcgcgcgccggctcgtcgcgctcggcaaacagctcgccgatctgaggccccagcag
tttggttacactacagaagacggagtggtaaccttcgccgccctctgcgtcggcggccat
gagctctctttggccttggcagaactccaagcttcagcgacgccccacggacgcgacagc
gagcaggacagcgaagacgatgcgccgctaccgccgcccatagtcatctccgaagcggac
ttcagagagaaagttcgcgagaaacgcgttggcatactgaagccgcagggctccttggag
agggcgcgcgaggagcgtgcgttggcgaccaccgatgatcagctttacgacgcatcagaa
gactgcgcggtaggaggcgacaggcgcgagatccgacggccgcgcgtcaacattgcgatg
gccgccatcttgcggaaacaagaagagagctgcaagcaggtcaagtttcgaacgcctcca
ccgacgctggacactagtgaagccgataccacccaaagggtcgacagtaccatcgatcgg
cccaaagttaagcagcaaaagtccctcgcagacatccctgtcggccggaaaactgggggc
atactagcgttgaaagacaaatccggctacccccacttggtgaacaatgccagcgaggta
accatcaaaaaacccgaagagctgccgcagagggatcccaaagtgatccaaccaccctcg
cacactgccaagcgcgacgggcctcaggccaagtggcatcagccgtatgagatccggccg
aaccaccggaactacggattaaataacgccgggataagatacaagccgaattacgaagca
ccggccacggccaccagccaaaaccagagcatacgtctgccggtcgtcaacccgaaggag
atagacgtgaggtccgctgccctccagcgccagagcggccgcaacgactacccccaacgc
ccgaactaccccgtcggcggcgacaagaagagcttcatggacgacctgccgccgcggttc
gcgaaccagcgctggaaccaggagcaggacaacaagttccgcgacgacttccgtaccaaa
cagctcaacgctaacatgttcagcacgccgccaccgaactggttgaataccatgccgatg
cagctgccccagcagcttccaatgcagtcgcagttgatgaggcctcaggtcccgccgcag
ctgtcgatgcctcccccgcctttgcccgactcgtactccccacagtcgtggtggaaccgg
ccaccttacaacgcgcccccgacccgcgcggacgcgatcacatcccagaccatggcggcg
atgcagcagatctacaactctcagctgtcgagcaatgttctcatgaacatgacgtcgcac
ggccagctgccgatgcctagttccgagtctggtttcgtccggcagtctcctattgggcag
ttgcccccccgccacatctcgccgcccaacttcagcccttatcccgtgccggctctgccc
tatccgaatgtatacgattatccccagtaccagagcagggattacttgggggagacgcgg
tacccagcacagcccgcgcaggaggtgggactggatctgacgattaggaagccgacgccg
gactttgtgccgttccacgcgcggcgtatggaggagggcgccctcgaacgggccatggac
gaagccctgaatgccagccctctgaaccagagcccgaagagcgatgagcacgaggaggca
gagtctccggcggaggaccccggcacttattcgctgtttagcgcagccccgggcgcctgc
gactggggcccgatggcccaaggccagcagggccgcggcaacgcaaacgtttag
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