Choristoneura fumiferana (eastern spruce budworm): 141434210
Help
Entry
141434210 CDS
T11020
Name
(RefSeq) cadherin-AgCad1-like
KO
K06813
cadherin 23
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
cfum03037
]
141434210
04515 Cell adhesion molecules [BR:
cfum04515
]
141434210
Cilium and associated proteins [BR:
cfum03037
]
Primary cilia and associated proteins
USH complex and associated proteins
141434210
Cell adhesion molecules [BR:
cfum04515
]
Cadherins
Major cadherins
141434210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
RnfC_N
Motif
Other DBs
NCBI-GeneID:
141434210
NCBI-ProteinID:
XP_073952672
LinkDB
All DBs
Position
13:complement(17877255..17906218)
Genome browser
AA seq
1729 aa
AA seq
DB search
MAMAANLYLIAAVLLTATPYISGQNEGHDCSYMTAIPRPQRPDDWPEFNFDGTTWPTRPL
LPAPDRLDLCMDQYYPGGANSGTQLIFMEEEIEGDIAIAKLNYQGTATPELTFRTGRNAL
LGAVVRQNTAGEWYIYVTQRQDYEEGMVSYSFNVRVEGQTLVPLVSLTIVNIDDNFPWLH
ILDPCQTEELGEARLTECVYDLTDADGQISTTAMTFEIISDRGDEQIFYIRAENVPGDWF
SMKITVGITQPLNFETNPLHIFTVHALDSLPNIGTASMMVQVENVESRPPRWTEIFAVQQ
FNEKTEMEFRVQAIDGDTAINKAIHYDIITEEGEEGFFSITTIAGGHSGGILHVAPIDRD
HLQREVFRFTIIAYKYDNREEFSTEAPIVIIINDINDQRPEPIQEEYRISMLEETPLTLD
FGEQIFGFHDRDLGENAQYTVELETVSPPGVAAAFYVAPQVGYQYQTFIMGTVDHAMLDY
EVEEFQHIVIRAVATDMNNSTLQGEAMLYIELINWNDEEPIFEEDAYFVSFNETEGADFY
VATVLAEDRDVDDEVVHSLMGNAGEYLSINSSTGEIRVSIDDAFDYHRQNELFVQVRAVD
TLGDERHHTVTTQLVIQLKDINNTPPSLRLPRGSPSVEENVPEGEVITTMITATDPDTTA
YLRFEIGWETSYATKQGRETPVAEFHDCVEIVTVHDEGNTGSAHGHLIVKEIRDNVTIDF
EEFEVLYITVRVVDEMTEIGQNFDEMTFTVIIIDMNDNWPIWDEETLSTEFRVRENSTSN
VVIGSVLATDIDGPLYNQIRYSIVPTRGTPDNLVQIHPVTGQITTNLEHAIDADIPPREY
LYYTVIASDRCEEEDRENCPDDPTYWETPGDISIYIIDTNNKLPQAEYDQFPTEVRIYED
AGDGTEVVRLVASDLDRDDIYHTVRYQINYVIDPDLRRFFAVDVDTGLIYIEFTTGAVLD
RDGDEPTHRIFVNLIDNLYSEGEGPPNIVATEVLVILLDVNDNAPVLPSPDERRWPITEG
LVQGARLSPQIHATDRDERFTNNSRVSYEVVDIRAVDRDIEVPILFDIETIPDLAAWEFY
GALFTTMDLRGYWGTYEIRVRAYDHGDPMLDSFEWYEVEIAPYNFHNPVFVFPLSGTTVR
LSKERSANGPLVTVGDAFLENLHATDEDGLHAGVVDFSVSGNVDAIEYFEVENLGENSGQ
LRLRSTFDEYVREFQVTIRATDRGTVPGPLWTDTILNVIFVPSLVDPTFTQSTDTVAFFE
QEVDGERHQLSLAEDLKNHGCTDDCYPIYYRIVDGNSDGHFELDASTNTLWVVRALDREA
AASHQLVVAASNSPAPAAASSTLTVTVNVREANPRPTFVRELYTAGISTLDVIGRELLVV
QATHSENAAITYSIDYSSMQVDASLEAVRDVAFSLHATSGALTLGIQPTAAMHGMFEFDV
IAEDAAGATDTTEVKVYLISSLNRVTFIFVNTVDEIEQNRDFIAETFSTGFSMTCNIDQV
LPATNSAGVAQTDRTEVRAHFIRADVPVPATEIEVLRDDTQLLFTIQMALRDRDLQLSDF
VTDLSPEESSDASLITIYVLAALSAVLAFLCLLLLITFFIRTRALNRRLEALSMTKYGSV
DSGLNRAGLAAPGTNKYATEGANPIWNETLKAPEFDAMSDASDDSDLIGIEDLPQFRNDF
FPPADNDSFQGVFDTPAVHRGVIPNHSNNFGFNTSPFSSDFTDRQFKRN
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcggctaatctttatttgattgctgcggtgctgctgacggcaacaccatat
atttcggggcagaatgaaggacatgactgctcctacatgacggctatcccgcggccgcaa
cgaccagatgattggccagagttcaatttcgacggtacgacatggcccacgcgacccctc
ttgccggcgccggaccgcctggacctctgcatggaccagtactaccctggtggcgccaac
tcaggcacgcagctcatcttcatggaggaggagatcgaaggggacatagctatcgccaag
ctcaattaccaaggcaccgcaaccccagagttgactttcaggaccggacggaatgctctg
ctcggtgccgtggtacgacaaaatacggccggtgaatggtacatctacgtgacgcaaagg
caagattacgaggaagggatggtgtcctactcgttcaacgtgcgggtggagggccaaaca
ctagtgccgctggtatctctcacaatcgtgaacatcgacgacaattttccctggctacac
atcctcgacccctgccagacagaggaattaggtgaggcccgactaaccgaatgcgtgtac
gacctcacagacgctgacggtcagatcagtaccaccgcgatgacgttcgaaatcatcagt
gaccgtggagacgagcagatcttctacattcgggccgaaaacgtgcccggcgactggttc
tctatgaagatcaccgttggcatcacgcaaccgctgaactttgagaccaatccgttgcat
atattcaccgtccacgctttggattccctaccaaacatcggcaccgcttccatgatggta
caagtggagaatgttgagagccgcccgccgcgctggacggagatcttcgcggtacagcag
tttaatgagaagacggagatggaattccgagtgcaagctattgatggcgacactgctatc
aacaaggccatccactatgatattattactgaggagggggaagagggattcttctccata
acaacgattgcgggcggacacagcggcggtatcctgcacgtagcgccaattgaccgcgac
cacttgcagcgagaggtgttccgcttcaccatcatcgcctacaaatatgataacagagaa
gagttctcgacggaggcgccaatagtgatcatcatcaatgacattaatgaccagcggccg
gagccgatacaggaggagtaccgcatcagcatgctcgaagagacgccgctgaccctcgac
ttcggggaacagatcttcggcttccatgatagggatcttggtgaaaacgctcaatatacc
gtagagctagagacagtgtcgcctcctggcgtggctgcggcgttctacgtggcgccccag
gtcgggtaccagtatcagaccttcatcatggggacggttgatcatgccatgctagactac
gaggttgaagagttccagcatatcgtgatcagggcagtagcaacagacatgaacaactcg
acgctgcaaggcgaggccatgctgtacattgagctgataaactggaacgacgaggagcca
atcttcgaggaggatgcatatttcgtctccttcaatgagactgagggcgccgacttctac
gtggcgaccgtgctggctgaagaccgggatgtagatgatgaagtggtgcattccctgatg
ggcaacgctggggagtatctgtctataaactcgagcaccggagaaattcgtgtctctatt
gacgatgctttcgactatcatcgccagaacgaactctttgtgcaggtgcgagctgtggac
accctcggggacgagcggcaccacactgtgaccacccagctggtcatacagctcaaggat
atcaacaacacacctccgagtctccgactgcctcgtggcagcccgagcgtggaagagaac
gtgccagaaggcgaggtgataactacgatgatcacggccactgaccccgacaccaccgcg
tatctgcgctttgagatcggctgggagacatcgtacgctaccaagcaggggcgagagaca
cctgttgctgagttccacgattgtgtagaaattgtaacggtccacgacgagggcaacacc
ggatcagcgcacggacatctcatagtcaaggagataagagacaacgtgaccatcgacttc
gaggagtttgaggtgctatatatcacagtgcgagtcgtcgacgagatgactgagataggc
cagaactttgatgagatgacgttcacagtcatcatcatcgatatgaacgacaactggcct
atctgggacgaagagacgctgtcaacggagtttagggtacgcgagaactcgaccagcaac
gtggtcatcggctccgtgcttgctactgacatcgacggcccgctgtataaccaaatacgg
tacagcatcgttccaacaagaggtactcccgacaatctagtccagattcatcccgtcacg
ggccagataacgaccaacctggagcatgccatcgacgccgacatccccccgcgggaatat
ttgtactacacggtcattgcgagcgatcggtgcgaagaggaggaccgtgagaattgccct
gacgatcccacgtattgggagacacctggagatatatctatatacatcatagacactaac
aacaagctgccgcaagcggagtacgaccagttccctacggaggtgcgcatctacgaagac
gccggcgatggcactgaggtggtgcggctggtggccagtgacctggacagggatgatata
taccacacggtgcgctatcagatcaactacgtgatcgacccggacctgcggcggttcttc
gccgtcgacgtcgacactggactcatctacatcgagttcaccaccggcgcggttttagac
agagatggagacgagcccacgcataggattttcgtcaacctcattgacaacctttattcc
gaaggagagggccctccaaacatcgtggcgacggaggtactggtcatccttctagacgtg
aacgacaacgcgccagtgttgccgtcacctgatgaaagaagatggccgatcaccgaggga
ctcgtacagggagcgcgtctcagccctcagatccacgctaccgaccgcgacgagcgtttc
accaacaactcccgcgtctcgtacgaggtcgtcgacatccgcgcagtcgaccgcgacatc
gaggtcccgatattgttcgacatcgagaccataccagacctagccgcctgggagttctac
ggggcactcttcaccaccatggatctgaggggctactggggcacttatgagattcgcgtg
cgggcctacgaccatggcgacccgatgctggactctttcgaatggtacgaggtggagatc
gccccttacaacttccacaacccggtattcgtgttccctctgagcggaaccactgtgcga
ctttccaaggagaggtcagcaaacggcccgctggtgacggtgggggatgcgttcctggag
aacctgcacgccactgatgaggatggactccacgccggcgtcgtcgacttctccgttagc
ggcaacgtggatgcaattgagtacttcgaagtggagaatctcggagagaatagtggacag
ttaaggctgagaagtaccttcgacgaatacgttagagagttccaagttacgatccgagcg
actgatcgtggcacggtccctggtcctttgtggacggacaccatactcaacgtgatcttc
gtgccctctctagtggaccctaccttcactcagagcactgatactgttgctttcttcgaa
caagaagtagatggcgagaggcatcaactatcgcttgctgaggacctgaaaaatcacggg
tgcacagatgactgctatcccatttactacaggatcgttgatggcaactccgacgggcac
ttcgagctggacgcgtccaccaacacgctgtgggtggtgcgcgctctggaccgcgaggcg
gccgcgtcgcaccagctggtcgtggccgccagtaactcgcccgcgcccgccgctgccagc
tccaccctcaccgtcactgtcaacgtccgtgaagccaacccgcggccgacgttcgtccgg
gagctgtacaccgccggcatctctacactggacgtcatcggcagggagctgcttgttgtg
caggcaacgcactcggagaacgcggcaataacatacagcatcgactacagcagcatgcag
gtggacgcgtctctggaggcggtccgggacgtggcgttctcgctgcacgccaccagcggc
gcgctcacgctcggcatacagcccacggccgctatgcacggcatgttcgagttcgacgtt
atcgccgaggacgctgctggagcgactgacaccactgaagtaaaggtctacctgatatcg
tcgctcaaccgcgtcactttcatctttgtcaacactgtggatgaaatcgaacagaacaga
gacttcatagcagaaaccttctctacgggcttcagcatgacgtgcaacatcgatcaagtg
ctgccggcgacgaactcggccggcgtcgcgcaaacggatcggaccgaagtgcgcgcacac
ttcatccgggccgacgtgcctgtgcccgccaccgagatcgaagtcttacgtgacgacacg
cagctgctattcaccatccaaatggctcttcgcgatcgcgacctgcagctcagtgacttc
gtgaccgacctgagccccgaagagagctccgacgccagcctcattactatctacgtcctc
gctgcgctctccgccgtgcttgccttcctctgtctcctgctgctaatcaccttcttcatc
agaacacgggcgttaaaccgtcggctggaggctctgtcgatgacgaagtacggctcggtg
gactcggggctgaaccgcgcggggctggcggcacccggcactaacaagtacgccacggag
ggcgccaaccccatctggaatgagaccctcaaggcgccagaatttgatgccatgagcgac
gcgtctgatgactcggacctgatcggcatcgaagacttgccgcagttccggaacgacttc
ttcccgcccgcagataatgactccttccagggcgtcttcgacactccggctgtccacaga
ggggtcatccctaaccacagcaataacttcgggttcaacaccagcccgttcagttcagac
ttcaccgaccgccagttcaaaagaaactaa
DBGET
integrated database retrieval system
