Choristoneura fumiferana (eastern spruce budworm): 141435697
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Entry
141435697 CDS
T11020
Symbol
atms
Name
(RefSeq) RNA polymerase II-associated factor 1-like protein antimeros isoform X1
KO
K15174
RNA polymerase II-associated factor 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141435697 (atms)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
PAF1 complex
141435697 (atms)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Paf1
Motif
Other DBs
NCBI-GeneID:
141435697
NCBI-ProteinID:
XP_073954542
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Position
15:complement(6008311..6017721)
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AA seq
584 aa
AA seq
DB search
MPPTVQTNEPERDKRPQRAGERRSELVTRVKYCNTLPDIPFDLKFITYPFPSTRFIQYNP
TSLEKNYRYEVLTEHDLGVHIDLINRDIYQGDGNATLDPADEKLLEDDVLTPQDSKRSRH
HAKNVSWLRRSEYISTEQTRFQPQSMEKVEAKVGYNVKKIFSEETLYMDRESQIKAIEKT
FEDNKLPIEKHYSKPGVVPVEIMPVFPDFEMWKYPCAQVIFDTDPAPSDKNVAGQIEAMS
QAMIRGVMDESGEQFVAYCLPTEETILKRRRDIAESTPYLDGDTYEYKMAREYNWNVKSK
ASKGYEENYFLVVRNHAVYYNELETRVRLSKRRARAGAAAQALTRLVVTHRPLGAAEHRI
LRLREKQLEPVQEDDDEEEEEDDDEEDEKQEQNEEKQRSRSRSKSGSKSPQGSERSRSGS
RSKSRSKSRSKSRSKSRSRSRSRSRSGSAASKKSRSRSGSAQSGSAKSGSGRSRSGSRAS
SRASSKSKGSRASSRASSKGSEKGSKASSKASSRASSRASKRSSRASSRASSKGSKASSR
ASSRKHSGSGSGSERSRSRSGSGSRRGSRSGSASSASSKHSGSD
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgccgccaacagtgcagactaacgaacccgaaagggacaaacgtcctcaaagagcaggg
gaaagaagatcggaactcgtaacacgtgtgaaatactgcaatacccttcctgatatcccg
tttgatttgaaattcataacttacccttttccttcgacacgcttcattcaatacaatcct
acgtctttggaaaagaattaccggtacgaagtgctgacagaacatgatttgggggtgcat
atcgaccttataaaccgggatatctatcaaggggatggcaacgcgacacttgatcccgca
gatgagaaattacttgaggatgatgtattgacaccccaagattctaaaagatcgcgtcat
catgccaagaatgtctcgtggttgcgtcgctccgagtatatctctactgagcagactagg
tttcagccacagtccatggaaaaggttgaagcgaaagtcggttacaatgtcaagaagata
ttcagtgaagaaaccctttacatggaccgcgaaagccaaatcaaagccattgagaagacg
tttgaagataacaaattgcctattgagaaacattatagcaagcctggtgtggttcccgtg
gagattatgccggtgttccctgactttgaaatgtggaagtacccttgtgcgcaggttata
tttgacacagatccagcgccgtcggacaagaatgtagcaggacaaattgaagccatgtca
caggctatgattcgaggtgtgatggacgaaagcggagaacagtttgttgcttactgttta
ccaacagaggagacaatactcaaacgtcgtagggacattgctgaaagcactccatactta
gatggtgacacttacgagtataagatggctagagaatataactggaatgtaaagagcaaa
gcttcgaagggttatgaagagaattacttcttggtggtccgcaaccacgcagtatactac
aacgagttggagacgcgcgtgcgactgtccaaacgccgcgcccgcgccggggcggccgcg
caggcactcacgcggctggtcgtgacgcaccggccgctcggcgccgctgagcatcgtata
ctgcggctccgcgagaaacagttggagcctgtgcaggaggatgatgacgaggaagaagaa
gaagacgacgacgaagaagacgaaaaacaagaacagaatgaagaaaaacagagatcgcgt
tcccggtcgaagtctggttccaagtctccccaaggctcggagcgttccaggtcagggtcg
cggtccaaatcgcggtcgaagtcgaggtcaaagtcgcggtcgaagtcgcggtcgaggtcc
cggtcgcggtcgcgctccggctccgctgcttccaagaagtcgaggtcgcgttctggttcc
gcacaatctggctccgctaagtcgggctccgggcgatcccgctcgggctcccgcgcttcg
tcccgcgctagctcgaaaagcaaaggctctagagccagttctcgtgccagctctaaaggc
agcgaaaagggttccaaggcatcttcaaaagctagttcgcgggcgtcgtcacgcgccagt
aagcgttcgtcgcgagcgtcctcgcgggcctcctccaagggctccaaggccagctcccgg
gcgagctcgcgcaagcactcgggctccggcagcggctcggagcgtagccgcagccgctcg
ggcagcgggtcgcgacggggctcccgcagtggatctgcatcaagcgcgtcgtcgaaacat
agtggctccgattag
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