Choristoneura fumiferana (eastern spruce budworm): 141435823
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Entry
141435823 CDS
T11020
Symbol
RfC4
Name
(RefSeq) replication factor C subunit RfC4
KO
K10755
replication factor C subunit 2/4
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03030
DNA replication
cfum03410
Base excision repair
cfum03420
Nucleotide excision repair
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141435823 (RfC4)
03410 Base excision repair
141435823 (RfC4)
03420 Nucleotide excision repair
141435823 (RfC4)
03430 Mismatch repair
141435823 (RfC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfum03032
]
141435823 (RfC4)
03036 Chromosome and associated proteins [BR:
cfum03036
]
141435823 (RfC4)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141435823 (RfC4)
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
141435823 (RfC4)
DNA Replication Termination Factors
ELG1-RFC complex
141435823 (RfC4)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
141435823 (RfC4)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
141435823 (RfC4)
Check point factors
HRAD17(Rad24)-RFC complex
141435823 (RfC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_22
AAA_16
AAA_14
RuvB_N
Viral_helicase1
nSTAND3
MeaB
AAA_24
AAA_11
Rad17
Mg_chelatase
AAA_18
AAA_5
AAA_19
RCF1-5-like_lid
DEAD
AAA_assoc_2
NTPase_1
AAA_23
MipZ
RNA_helicase
ABC_tran
IstB_IS21
CbiA
ResIII
MCM
AAA_30
AAA_28
AAA_25
AAA_3
FtsK_SpoIIIE
ATPase_2
Castor_Poll_mid
SRP54
AAA_7
Motif
Other DBs
NCBI-GeneID:
141435823
NCBI-ProteinID:
XP_073954754
LinkDB
All DBs
Position
15:complement(2823226..2829439)
Genome browser
AA seq
349 aa
AA seq
DB search
MSDDEVTIMEVDEPAPKPSKSSAVKAGGHLPWIEKYRPQVFSDIVGNEDTVARLAVFARS
GNAPNIIIAGPPGVGKTTTILCLARALLGASYRDAVLELNASNDRGIDVVRNKIKMFAQQ
KVTLPAGRHKIVILDEADSMTEGAQQALRRTMELYSSSTRFALAANTSEKIIEPIQSRCA
VLRYSKLSDAQILAKVIEVCEKEQLSYTEEGVSAVVFTAQGDLRAALNNLQATAQGFSHV
SPEHVFKVCDEPHPQLVRGMLEACARKDIHDAYKVIAKLCKLGYAAEDIVSNIFRVCKTL
DAPEPLRLAFIREVGLTHMRVADGLGAPLQLAGLLARLCRVAAGGDTDW
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatgatgaggtaaccataatggaggtggacgagcccgcgccgaagccttcgaag
tcgagcgcggtcaaagcgggcgggcacttgccgtggatcgagaagtaccggcctcaggtg
ttcagcgacatcgtgggcaacgaggacacggtggcgcgcctggcggtgttcgcgcgcagc
ggcaacgcgcccaacatcatcatcgcgggcccgcccggcgtgggcaagaccaccactatc
ctgtgcctggcgcgcgcgctgctgggcgcgtcctaccgcgacgccgtgctcgagctcaac
gcctccaacgaccgcggcatcgacgtcgtgcgcaacaagatcaagatgtttgcgcagcag
aaggtgacgctgccagcggggcgccacaagatagtgatcctggacgaggcggacagcatg
acagagggcgcgcagcaggcgctgcggcgcaccatggagctgtactccagcagcacgcgc
tttgcgctggccgccaacacctccgagaagatcatcgagcccatccagtcccgctgcgcc
gtgctgcgctactccaagctctccgatgcacagatactggccaaggtgatcgaggtgtgc
gagaaggaacagctgtcgtacacggaggagggcgtgagcgcggtcgtgttcacggcgcag
ggcgacctgcgggccgcgcttaacaacctgcaggcgacggcgcagggcttctcgcacgtg
tccccggagcacgtgttcaaggtgtgcgacgagccgcacccgcagctcgtgcgcgggatg
ctggaggcctgcgcgcgcaaggacatacacgacgcttacaaggtgatagccaagctgtgc
aagctggggtacgcggcggaagacatcgtgagcaacatcttccgcgtgtgcaagacgctg
gacgcgcccgagccgctgcggctggccttcatccgggaggtgggcctgacgcacatgcgc
gtcgccgacgggctgggcgcgccgctgcagctggccggcctgctggcgcgcctctgccgc
gtggccgccgggggcgacaccgactggtga
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