Choristoneura fumiferana (eastern spruce budworm): 141436173
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Entry
141436173 CDS
T11020
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141436173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141436173
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141436173
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
DUF2046
MnmE_helical
AAA_27
Motif
Other DBs
NCBI-GeneID:
141436173
NCBI-ProteinID:
XP_073955156
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Position
16:10314961..10329338
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AA seq
586 aa
AA seq
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SFCKLTSSLLAQWLRQPLRDINLINERLDVVELLVDNSQLRLQLHDDHLRRIPDLRALAR
RLTRKKANLHDCYRIYQAINRLPPLLQCLAEANNATVHSSIAEPISELNDDLIKFQQMIE
STVDMEAVDKGEFLVNPAFDEQLQTLRGELDQLQASAEKELSKAARDLGLDAGKTIKLES
NPQNGYCLRVTMKEEQSLRGNKKYTIIDAVKGGVRFKTNTLANLTDDYVTTKATYEKEQD
KVVAEIVGIASGYSECLFCLSHVLSRLDVLVSFAVAAATAPHPYCRPVVTEDIDNFVLKD
VRHPCLEVQEGVSFIPNDVVFKRDSCLMHVVTGANMGGKSTWMRSCGAAALLAHAGCLVP
AASATVPRLKALCARVGAADREQRGQSTFMLEMIESATILRTATPDSLVLIDELGRGTST
YEGCGIAWAIAEELATKCKCFCLFATHYHELTRLPSLHPGVIVNSHAEASVVDQQLLLLH
KIAPGPATHSLGLHVAKLADLPESIIEYAEAKQAQLETNLFETDNSNDQESSAGQELILE
FLRKCKNIEASHTSDEELFKEIKVLKKNLLQQDNKYLQSLMIGCDK
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
tcattttgcaaattgacttccagcctcctcgcccaatggttgcgtcagcctctccgggac
atcaacttgatcaacgagcgacttgacgtggtcgagttgctggtagacaactcgcagctc
cgcttacaactacacgacgaccacctgagaaggataccggacttgcgagcgctggccagg
cggctgacgcggaagaaggctaacttgcatgactgttacaggatttatcaggcaatcaac
cgcctgccccctctcttgcaatgtcttgccgaagccaacaatgcgacggtccactcatcc
atcgcggaacccatctcagaactgaacgacgaccttatcaagttccagcaaatgatcgag
agtactgttgacatggaagctgttgacaaaggcgagttcctggtaaacccggcattcgac
gagcagttacaaacactgcgcggcgaactggaccaactgcaggcttcagctgagaaagag
ctcagcaaagctgcccgcgacctggggctcgatgccggcaaaactatcaaattagagagt
aacccacaaaatggatactgtcttagagtaacaatgaaagaagaacaatcactccgtggc
aataaaaagtacaccatcatagacgcagtgaagggaggggtgaggtttaaaaccaatact
ctcgccaaccttactgacgactacgtgacgactaaggcgacgtatgagaaggaacaagac
aaagtcgtggctgagattgtcggaatcgcctctggttattcagagtgtctcttctgcctc
tctcacgtcctgtctcgcctggacgtgttagtttccttcgcggttgccgctgcgaccgcc
ccgcacccgtactgccggccggtcgtcactgaggatatcgacaacttcgtgctaaaggac
gtaagacatccctgtcttgaagtgcaggaaggcgtgtcgtttataccgaacgatgttgtt
ttcaaaagagattcctgtctcatgcatgtagtaacaggcgccaatatgggcggcaaatcc
acttggatgcgctcatgcggcgcggcagccttactggcccacgcgggctgtttagtacca
gcggcgagtgcaactgtaccgagactaaaggcgctatgcgctagggttggcgcggccgat
cgggagcagagaggacagagcacttttatgctggaaatgattgagtctgctactattctg
agaacagctacgccagattctttagtgcttattgatgaactgggcagaggcacatcgaca
tacgagggttgcggaatcgcctgggctatagcagaagaactagcaacaaagtgcaaatgc
ttctgcctgttcgcaactcactaccacgaactgacgagacttccgagcttgcatccgggc
gtaatcgtcaactcccacgccgaagcttccgtcgtagatcaacagttactgctgcttcat
aaaatcgcccccggcccggcgacacattccctgggactccacgttgctaaattagccgat
ttaccggaatccataatcgagtatgctgaagcaaaacaagcgcaactggagacaaacttg
tttgagactgataatagcaatgatcaggagtcatcagccggtcaagagctgatcttggaa
tttctgcgcaagtgcaagaacattgaagcatctcatacctcagatgaagaattgttcaaa
gaaattaaagttttaaagaaaaacttattgcagcaagacaataagtatctccagtcactt
atgattggatgtgataaataa
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