Choristoneura fumiferana (eastern spruce budworm): 141436179
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Entry
141436179 CDS
T11020
Name
(RefSeq) DNA mismatch repair protein Msh2-like
KO
K08735
DNA mismatch repair protein MSH2
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141436179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141436179
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141436179
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
MnmE_helical
Motif
Other DBs
NCBI-GeneID:
141436179
NCBI-ProteinID:
XP_073955162
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Position
16:10245368..10284962
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AA seq
919 aa
AA seq
DB search
MSTLQPIHALNLDSVQQQTFIKYYNSLPDKPPTTVRIFDRNDYYSVHGVDATTCSREVFS
SIANIKKMGLEPNKLDYLVLSKGNFEILIKKLLLVRRYRVEIYVAEGSVKSNEWSLQYKG
SPGCLSQLEEVLGEGLGATDDITPCLLAVNIKTDAVTKGRLLGVACITAGDYQMSVTEFT
DDDLLTELETITVQLAPSECLVPMVENDDYKALSKVMERASVTVTKLKRCEFSTEGLMQD
LNRLLKFKENQQQDANAFEETRKEVAMTSLAAAIKYVSLMSESTNFGRFRLSTIQADCFL
HLDAAALSALNVLPELGDSSRAPARSLLGLLDRCRTQQGKRLLAQWLRQPLRDINLINER
LDVVELLVDNSQLRLQLHDDHLRRIPDLRALARRLTRKKANLHDCYRIYQAINRLPPLLQ
CLAEANNATVHSSIAEPISELNDDLIKFQQMIESTVDMEAVDKGEFLVNPAFDEQLQTLR
GELDQLQASAEKELSKAARDLGLDAGKTIKLESNPQNGYCLRVTMKEEQSLRGNKKYTII
DAVKGGVRFKTNTLANLTDEYVTTKATYEKEQDKVVAEIVGIASGYSECLFCLSHVLSRL
DVLVSFAVAAATAPHPYCRPVVTEDIDNFVLKDVRHPCLEVQEGVSFIPNDVVFKRDSCL
MHVVTGANMGGKSTWMRSCGAAALLAHAGCLVPAASATVPRLKALCARVGAADREQRGQS
TFMLEMIESATILRTATPDSLVLIDELGRGTSTYEGCGIAWAIAEELATKCKCFCLFATH
YHELTRLPSLHPGVIVNSHAEASVVDQQLLLLHKIAPGPATHSLGLHVAKLADLPESIIE
YAEAKQAQLETNLFETDNSNDQESSAGQELILEFLRKCKNIEASHTSDEAMFKEIKVLKK
NLLQQDNKYLQSLMIGCDK
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactacaacctattcatgccctaaacctcgattcagtgcagcagcaaacattc
atcaaatattataattcgttacctgataaaccgcctactacagtaagaatatttgaccgc
aatgactattatagcgtccacggtgtcgacgcaaccacttgctccagagaagtcttctct
tccatcgctaatattaagaaaatgggcctcgagcctaacaaacttgactacctcgtgctc
tccaaaggaaacttcgagattcttatcaagaaattgttactggtaagaagatatagagta
gaaatatacgtagcagaaggctcagtgaagagtaacgagtggtcgctccagtataaaggg
tcgccaggctgcctctcgcagctagaggaagtgctgggggaaggcctaggagctactgat
gacatcacgccgtgcttgttggctgtgaatatcaaaactgatgctgtcaccaagggtcga
ctgctgggggtggcgtgtataacggcgggcgactaccagatgtccgtgacagaattcacc
gacgatgatctactgactgagctcgaaaccattactgtgcagttggcgccttcggagtgt
ctagtgccgatggttgaaaacgatgactacaaagccctcagcaaagtaatggaaagagca
agcgtgacagtaacaaaactgaagcggtgcgagttctccacggaaggtctcatgcaagat
ctgaaccgtctgctcaagtttaaggagaaccagcaacaagatgccaacgcttttgaggag
accaggaaggaagtcgccatgaccagcttagcggcggccattaaatatgtgtcgcttatg
agtgagagcactaattttggaagattccgtctaagcacaattcaagcggattgtttcctc
cacctcgacgctgcggcgctgtcggcactgaatgtactcccggagttaggtgactcgtcg
cgcgcacccgcccgcagtctactgggcttgctcgacagatgtcgcactcagcaaggaaaa
cgcctcctcgcccaatggttgcgtcagcctctccgggacatcaacttgatcaacgagcga
cttgacgtggtcgagttgctggtagacaactcgcagctccgcttacaactacacgacgac
cacctgagaaggataccggacttgcgagcgctggccaggcggctgacgcggaagaaggct
aacttgcatgactgttacaggatttatcaggcaatcaaccgcctgccccctctcttgcaa
tgtctcgccgaagccaacaatgcgacggtccactcatccatcgcggaaccgatctcagaa
ctgaacgacgaccttatcaagttccagcaaatgatcgagagtactgttgacatggaagct
gttgacaaaggcgagttcctggtaaacccggcattcgacgagcagttacaaacactgcgc
ggcgaactggaccaactgcaggcttcagctgagaaagagctcagcaaagctgcccgcgac
ctgggactcgatgccggcaaaactatcaaattagagagtaacccacaaaatggatactgt
cttagagtaacaatgaaagaagaacaatcactccgtggcaataaaaagtacaccatcata
gacgcagtgaagggaggggtgaggtttaaaaccaatactctcgccaaccttactgacgaa
tacgtgacgactaaggcgacgtatgagaaggaacaagacaaagttgtggctgagattgtc
ggaatcgcctctggttattcagagtgtctcttctgcctctctcacgtcctgtctcgcctg
gacgtgttagtttccttcgcggttgccgctgcgaccgccccgcacccgtactgccggccg
gtcgtcactgaggatatcgacaacttcgtgctaaaggacgtaagacatccctgtcttgaa
gtgcaggaaggcgtgtcgtttataccgaacgatgttgttttcaaaagagattcctgtctc
atgcatgtagtaacaggcgccaatatgggcggcaaatccacttggatgcgctcatgcggc
gcggcagccttactggcccacgcgggctgtttagtaccagcggcgagtgcaactgtaccg
agactaaaggcgctatgcgctagggttggcgcggccgatcgggagcagagaggacagagc
acttttatgctggaaatgattgagtctgctactattctgagaacagctacgccagattct
ttagtgcttattgatgaactgggcagaggcacatcgacatatgagggttgcggcatcgcc
tgggctatagcagaagaactagcaacaaagtgcaaatgcttctgcctgttcgcaactcac
taccacgaattgacgagacttccgagcttgcatccgggtgttatcgtcaactcccacgcc
gaagcttccgtcgtggatcaacagttactgctgcttcataaaatcgcccccggcccggcg
acacattccctgggactccacgttgctaaattagccgatttaccggaatccataatcgag
tatgctgaagcaaaacaagcgcaactggagacaaacttgtttgagactgataatagcaat
gatcaggagtcatcagccggtcaagagctgatcttggaatttctgcgcaagtgcaagaac
attgaagcatctcatacctcagatgaagcaatgttcaaagaaattaaagttttaaagaaa
aacttattgcagcaagacaataagtatctccagtcccttatgattggatgtgataaataa
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