Choristoneura fumiferana (eastern spruce budworm): 141436412
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Entry
141436412 CDS
T11020
Symbol
Liprin-alpha
Name
(RefSeq) PTPRF interacting protein alpha isoform X1
KO
K26226
liprin-alpha
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141436412 (Liprin-alpha)
Membrane trafficking [BR:
cfum04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
141436412 (Liprin-alpha)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
SAM_2
ATG16
FlxA
Motif
Other DBs
NCBI-GeneID:
141436412
NCBI-ProteinID:
XP_073955483
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All DBs
Position
16:complement(1068197..1261590)
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AA seq
1131 aa
AA seq
DB search
MWNMMCDVMPTISEDSISQRSSQFSGEDANFEQLMVSMLDERDKLVESLRETQERLGDSE
LRLKEVEKERDSLHRQIAANLPQEFATLTKELNQAREQLLEREEEISELKAERNNTRLLL
EHLECLVSRHERSLRMTVVKRQAAAQSGVSSEVEVLKALKSLFEHHKALDEKVRERLRVA
LERNTALEEELALTKEELQQYKSGQDSDRPKENGAVSTGSPEHNGEQLQTKEGSVNGDER
KTTELQNTIAKQSAELSSWQRRVAELNNKVSELEERLAKGEKELVKKQEECAKLTRDLRE
NSAQKEDQEERIATLEKRYLNAQRESTSLHDLNEKLEQELQHKQAQLKLQEEKIAAIEEK
LELSSQKLAQMSSLPEMEEQLKARMEALSQVGIAQERHGSAEDRIQRLEASVEEKNAELM
RLNQRLRMNEEHNTRLSATVDKLLSESNDRLQVHLKERMHALDEKNALTQELEKTRKYAE
ELVAEKQEILKELAKWRMETEQLKRQMLQQEIAFNIQQTDALTRSLSPGAPPQPPQALYQ
TKLDGSWEKLQAAHALASVQQGFDASDAENDESDGGVEGGHTDAAALALMLQEQLDAINT
EIRLIQEEKQTTEARAEELESRQVGSYEHMNVLSRRGDSPPLAASPSRPHLAPIHKYHTA
PASMSPAHGHLRAPPSSESLPASQLCEDGVAAEGAESPLTQRSLRLERAARALHAERDRL
RTHYPAPYDSSSIMSGSLARIPIHSSSQESLGGLATGPAWGGGASPGLPRGVAAAASAVS
IASMHQQKKRGIKSSLGRFFSKKEKAGMPMQGQGQGSRSMSSASSLGLSSLADEEAPAPP
HQDYARAKTKDRDYRHELLGEAMRAGTPFALWNGPTVVAWLELWVGMPAWYVAACRANVK
SGAIMSALSDQEIQREIGISNPLHRLKLRLAIQEMVSLTSPSAPRGTACAALAFGDMNHE
WIGNVWLPSLGLPQYRTTFMECLVDARMLEHLTKRDLRTQLKMVDSFHRTSLHFGVACLK
RVGYSVRALEERRRAADHCNRDVLVWSNERLQRWLMSINLKEYANNLVESGVHGALIALD
DNFDGNSMALALQIPTQNTQARQILEVEFGNLLATGTERAARLPHDHAAAS
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgtggaatatgatgtgcgacgtgatgcccactatatcggaagacagtatcagccagagg
agttcgcagttttcgggggaggatgcgaatttcgagcagcttatggtgtctatgctcgac
gagcgtgataagctcgtggagagcctgcgggagacgcaggagcggctcggggactccgag
ctccgtctgaaggaggtggagaaggagcgggactcgctgcaccgccagatcgccgccaac
ttacctcaggaattcgcaaccctcacgaaggaactcaaccaggcgcgagagcaactattg
gagcgagaggaagagatctccgaactcaaagcagagaggaacaataccaggctacttctc
gagcacttagaatgcctggtgtcgcggcacgagcgctcgctgcgcatgaccgtggtaaag
cggcaggcggccgcgcagtcaggcgtctcctcggaggtagaggtgctgaaggcgctcaag
agtctgttcgagcatcacaaggcgctggacgaaaaggtccgggagcggttacgagtagcg
ttagagaggaacacagctttagaagaagaattagcgttaaccaaagaagaactgcaacag
tacaaatccgggcaggacagcgaccggccgaaggaaaacggtgccgtcagcaccggctcg
ccggaacacaacggcgaacagttacaaactaaggagggtagcgttaacggggacgagcgg
aaaaccaccgagcttcaaaatacgatcgccaaacagtcagcagagctgagttcctggcag
cggcgcgtggcggagctaaacaacaaagtgagcgagctggaggaacggctggccaaaggg
gagaaggagctcgtgaagaaacaggaggagtgcgccaagctcaccagggacttgagagag
aatagcgcgcagaaagaggaccaggaggagcggatagcgacgctggagaagcgctatctg
aacgcgcagcgcgagtccacgtcgcttcacgatctcaacgagaagctagaacaggagtta
caacataagcaggcgcaactcaagctccaagaagagaagatagcggccattgaggagaag
ctggagctgtcgtcgcagaagttggcgcagatgtcctccctccccgaaatggaggagcag
ctaaaggcgcgcatggaagcgctcagccaggttggcattgcgcaggaacgtcatggttcg
gcagaggaccgcatccagcggttagaagccagcgtggaggagaagaatgcagagctgatg
agactgaaccaaaggttgcggatgaatgaagaacacaataccaggctgagcgccactgtc
gacaagctgctgtctgagtctaatgacaggttacaagttcatctcaaggagcgaatgcac
gcgttagatgagaagaacgcactgactcaggagttggagaagacgaggaagtacgctgaa
gaactggtcgcggagaagcaggagattctcaaggagctggcaaagtggagaatggagacc
gaacagctgaagaggcagatgttgcagcaggagatcgcgttcaatatccagcagacggac
gcgctcacgcgctcgctgtctcccggcgcgcccccgcagccgccgcaggcgctctaccag
accaagttggacgggtcgtgggagaagctgcaagcggcgcacgcgctggcgagcgtgcaa
caaggcttcgatgccagcgacgccgagaacgacgagtcggacggcggcgtggaggggggc
cacacggacgcggcggcgctggcgctcatgctgcaggaacagctggacgccatcaacacc
gagatacggctcatacaggaggagaagcagaccacggaggcgcgcgccgaggagctcgag
tccaggcaggtgggcagctacgagcacatgaacgtgttgtcgcggcgcggggactcgccc
cccctcgcggcgtcgccctcgcgcccccacctggcgcccatacacaagtaccacacggcg
ccggcgtcgatgtcgcccgcgcacgggcacctgcgcgcgccgccctcgtcggagagtctc
ccggccagccagctgtgcgaggacggcgtggcggcggagggcgcggagtcgccgctcacg
cagcgctcgctgcggctcgaacgggctgcgcgcgcgctgcacgcggagcgggatcggctg
cgcacgcactaccccgcgccgtatgactcgagttcaataatgtcaggatcgctggctagg
atcccgattcacagctcaagccaagagtccctgggcggtctcgcgacgggaccggcgtgg
ggcgggggcgcgtcccccggcctcccgcggggggtcgcggcggccgcctccgcggtctcc
atcgcctctatgcaccagcagaagaaacgcggcatcaagagcagcttggggcggttcttc
agcaaaaaagagaaggctgggatgccgatgcaggggcaagggcagggctcccgctcgatg
tcgtcggcgtcctcgctggggctgtcctcgctggccgatgaagaggcgccggcgccgccg
caccaggactacgcgagggctaagaccaaggatcgcgactaccgtcacgagttgctcggc
gaggcgatgcgcgcgggcacgccgttcgcgctgtggaacgggcccacggtcgtggcctgg
ctcgagctgtgggtcggcatgccggcctggtacgtggccgcctgccgcgccaacgtcaag
tcaggcgccatcatgtccgcgctctccgaccaggagatacagagggagataggcattagc
aacccgctgcaccggctgaagttgcggttggcgatccaggaaatggtctctctgacgtca
cccagcgcgccgcgcggcaccgcctgcgccgcgctcgccttcggggacatgaaccacgag
tggatcgggaacgtctggctgccttcgctagggctgccgcagtaccgcacgacgttcatg
gagtgtctggtggacgcgcgcatgctggaacacctcaccaagcgcgacctgcgcacgcag
ctcaaaatggtcgacagcttccacagaacgtcgctccacttcggcgtggcgtgcctgaaa
cgcgtgggctacagcgtgcgcgcgctggaggagcggcgccgcgcggcggaccactgcaac
cgggacgtgctcgtctggagcaacgagcgtctgcagcgctggctcatgtccatcaacctc
aaggagtatgctaataatttagtggagagcggcgtgcacggcgcactgatcgccctcgac
gataacttcgacggcaacagcatggcgctcgcgctgcaaatacccacgcagaacacgcag
gcgcggcaaatcctcgaagtagaatttggaaatctcctggcgacaggcacggagcgcgcg
gcgcggctcccgcacgaccacgcagcggcttcctga
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