Choristoneura fumiferana (eastern spruce budworm): 141436448
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Entry
141436448 CDS
T11020
Name
(RefSeq) probable oligoribonuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141436448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141436448
03009 Ribosome biogenesis [BR:
cfum03009
]
141436448
Messenger RNA biogenesis [BR:
cfum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
141436448
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
RNases
141436448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Dicer_PBD
Motif
Other DBs
NCBI-GeneID:
141436448
NCBI-ProteinID:
XP_073955534
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All DBs
Position
16:complement(4781655..4783799)
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AA seq
220 aa
AA seq
DB search
MYSLRNFLTLHVNNIVKSIIRPMSSKNQLKQNMTPLAREAAKRIVWVDLEMTGLNIENDH
IMEIGCLITDADLNVVATGPNLIIHQPDSILDKMATWCMAQHGESGLTEASRKSKLSVQD
AERQILEFVSIHVPEKRCPLGGNSVYMDRLFLNKYMPRFNNYLHYRIIDVSTIKELARRW
YQKDYSGIPQKKFRHRSIDDILESVEELKYYKKHIFKSLE
NT seq
663 nt
NT seq
+upstream
nt +downstream
nt
atgtatagtttgcgtaattttttaacgttgcatgtaaacaatatagtcaaaagtatcatt
cggcctatgtcaagcaaaaatcaactaaaacaaaacatgacacctctagccagagaagca
gctaagcgtattgtgtgggtggacttagaaatgactggtttgaacatagagaacgaccac
attatggagataggctgcttaataacggatgctgatttaaatgtggtggccacaggtcct
aacttaataatacaccagcctgatagtattttggataaaatggcgacatggtgcatggcg
caacatggtgagagtggactgacggaggctagccgcaaatcgaagctgtcagttcaggac
gcagaaaggcagattctcgaatttgttagcatccatgtaccagagaagagatgcccgctg
ggaggcaatagtgtctatatggaccgtctgttcttgaataaatacatgccacgttttaat
aattacttacactatagaattattgatgtgagcacaataaaagaattggcaagacgatgg
taccaaaaagactattcaggaataccgcagaagaaatttagacacaggtcaattgatgat
attctagagagtgtggaagaactgaaatattataaaaagcatatatttaaatcattagaa
taa
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