Choristoneura fumiferana (eastern spruce budworm): 141436800
Help
Entry
141436800 CDS
T11020
Symbol
Polr1A
Name
(RefSeq) RNA polymerase I subunit RpI1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141436800 (Polr1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141436800 (Polr1A)
Enzymes [BR:
cfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141436800 (Polr1A)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
141436800 (Polr1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
SURF2
RPAP3_C
Motif
Other DBs
NCBI-GeneID:
141436800
NCBI-ProteinID:
XP_073955958
LinkDB
All DBs
Position
17:4409482..4415665
Genome browser
AA seq
1670 aa
AA seq
DB search
MAFKSAFTSALQGLTSVDPNGVQFLMFSDDEIRKLSVAKITNSTSFDSMGNTTKGGLYDR
ALGPIRERNDFCATCTNPLLHCLGHFGHIELPLVVVNPLFFKNIYTLFRVSCLKCFRIQM
DDKTKATLLLQLRLLDAGYVTEAMDLESFFNTDTKGTNDSIPDKPPKIIRKYQKMLSKRD
PVTETFCNKNTDRLRSKFISNIFKTINIGKSCIYCRSRLIKVTTSDNKLMHNITGDSRGG
EMKGVKILMPDEIKYYCTSIAQNDEEILKQCIPVLMHTKAKPATNVFFMEIVPVLPPNVR
PCNVLMGELMEHPQNNIYKAIMQSAYGARAVLQVMSSSDQQKCIDSLEQAPRQAYEGVPG
KTAAEKLHTVWQDLQRHVNDILSCEGQGLTSLGLKQVLEKKTGVIRMHMMGKRVNFAARS
VITPDPNVDIDEIGVPDAFATKLTYPVPVTEWNVDELRKMVINGPNKHPGAEKLEIENGR
VILIPPDSLQKRKSLAKRLLTPDEYKKSSLKVVHRHLINGDVLILNRQPSLHKPSMMAHR
ARILKGEKTLRLHYANCKSYNADFDGDEMNAHFPQNEIARSEAYNIMSVRKQYLVPKDGT
PLSGLIQDHVISGVKMSLRGTFYTKSDYQQLVFQALSNQRGEIKLLPPTILKPMVLWSGK
QVLSTIIINSIPKGKAYLSLTGNAKISSKAWQKQPSRPWKAGGTPLEGNDMSEAEVVIRK
GELLSGVLDKTHYGATPYGLVHCMYELYGGDGSCALLSSFSKVFTFYLQWIGFTLGVKDI
LVVDEANQQRDDYICLVRQVGKIAAAKATDLPVDIDEHTLKATIGEMMQKDPKFRANLDR
QYKNVLDSHTNSINTACLSEGLLEKFPYNNLQLMVQSGAKGSTVNTMQISCLLGQIELEG
KRPPLMISGRSLPSFPPYDISPRAGGFIDGRFMTGIQPQEFFFHCMAGREGLIDTAVKTS
RSGYLQRCLIKHLEGLSVAYDHTVRDADSSVIQFAYGEDGLDVLKCQYLKENQFQFLDIN
SNAVVSPSIIKKLKEDADTKSIAKAQKSLKKWIKKHGDPNEKVRISPFAEFSKVARNTIE
LDDKPTDQTRDPYYWELEKMWRDLNEEDRQQYAKKSCPDPIPSKLSPEYKFGVISEQLDS
IIQNYLKNRKENPYMERTEKDKFVEIMNAKYLESMAAPGEPVGMLAAQSIGEPSTQMTLN
TFHFAGRGDMNVTLGIPRLREILMTASAKLKTPNMDIPFKEVPNLNKKAERLRQKLNRVT
VADVLEKIDVQCEIVTEPDRQLKTTMRFSFLPKAQYKTQYIVKPAQIIKHMQRKFFGEMF
STIKKQAKATSGVLWSAEKKSRQRKRDDDDDDNDEGEAPIARDAELDPDVNSSDEEEPND
DDDTTQVKNRNMHAEEQEYEDPESGEEDKSDDEVEIDEQAKENDEMEQEPIKDNITEKDT
KAMTEVVENIQSATNYSFDTKNHEWCELTVLFPITFLKVDLSQALRDTAARSVIHEVKNI
KRAITNREKDVLYLKTEGINIVEMFKYNDLLLVNKLYSNDIHAIARTYGIEAANKVIIKE
IQNVFNVYGITVDPRHLTLVADYMTYNGVFEPMSRKGMESSTSPLQQMSFESSLIFLKEA
VMNAKCDKIQSASACLMLGQPCRSGTGAFGLQGPLLTKTSKKKKFSSDDE
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggcttttaagtcggctttcacgtcggccttgcagggcctgacgtccgtggatccgaac
ggtgtccaattcttaatgttcagcgacgacgaaatccggaaacttagtgtagcgaaaata
actaactcaacgtccttcgactcaatgggcaacaccactaagggaggcctctacgaccga
gcattaggacctatcagagagcgaaacgacttctgcgcaacttgcactaatcctctcttg
cattgcctgggtcattttggtcatatagaactgcctctggttgtagtcaacccgttattc
ttcaagaatatttacacgttgtttcgcgttagttgcttaaaatgctttagaatccagatg
gatgacaaaacaaaagcaactttgctgctgcagttaagattacttgatgcaggatatgtc
acagaagctatggacttagaaagtttcttcaatactgacacaaaaggtaccaacgactct
attccagacaagcctcctaaaattataaggaaatatcaaaaaatgttaagtaaaagagat
cctgtaacagaaactttttgtaacaagaatacagacaggttgcgatcgaaatttattagt
aacattttcaaaaccatcaacataggaaagtcatgtatttactgtagaagcaggttaata
aaagtgacaacatcagataataaactaatgcacaacataactggcgacagtcgtggagga
gaaatgaagggtgtgaagatactaatgccagatgaaataaaatactattgcacatccata
gcacaaaatgatgaagagattttgaaacagtgcatacctgttcttatgcatactaaagcc
aagcctgccacaaatgtatttttcatggaaattgtccctgtattgccaccaaatgtccga
ccttgcaatgtcttaatgggagaactcatggaacaccctcagaataatatctataaggca
atcatgcagtcagcttatggtgcccgagccgtattgcaggtcatgtcttcatcagatcag
cagaaatgcatagacagccttgaacaagcaccgagacaggcttatgaaggtgtaccaggc
aaaaccgctgcagaaaagctgcacacagtatggcaagacttgcagagacatgtgaatgat
atactcagctgcgagggccaaggtctaaccagcttgggacttaaacaagttctagaaaag
aaaacaggtgtgattagaatgcatatgatgggtaaaagagttaattttgcagctcgctct
gtcatcacacctgatcccaatgttgatattgatgaaattggtgtacctgatgcatttgca
acaaagttaacataccccgtacctgtaactgagtggaatgtggatgaattgagaaaaatg
gtaataaatggacctaataaacatccaggagctgagaaacttgaaattgaaaatggaagg
gtgattttgattccaccagactctctgcaaaagagaaaaagtttagctaaaagattgtta
actccagatgagtacaagaagtccagtttaaaagttgtacacagacacttaattaatggt
gatgttttaattttgaatcgacaaccatctctccacaagcctagtatgatggctcacaga
gcaaggattcttaagggagaaaagacactcagattacattatgccaactgcaaatcttac
aatgctgatttcgatggtgatgaaatgaatgctcattttccacaaaatgaaattgccaga
agtgaagcatacaatatcatgtcagtgagaaagcagtaccttgtaccaaaagacggtacc
cccctcagtggtcttattcaagatcatgtcatctcaggagtgaaaatgtctctacgaggt
actttttacacaaaatctgattaccaacaactggtctttcaagcattatctaaccaaaga
ggagaaatcaagctgttacctccaacaatacttaaaccaatggtgctatggtctggtaag
caagtcctgtcaacaatcatcatcaacagtatacccaaagggaaggcatacctctccctg
actggtaatgcgaagatcagctcaaaggcatggcaaaagcagccgtccagaccttggaag
gctggtggcacacctttagaaggtaatgatatgtcagaagcagaagttgttatcagaaaa
ggagaacttttgtctggggtgttagataaaactcactatggcgccacaccttacggctta
gtacattgtatgtacgaattgtatggaggagatggttcatgcgccttgctcagttcattt
tccaaggtgtttactttctacttgcaatggatcgggtttacacttggtgttaaagacatt
ttggttgtggacgaagccaatcaacaacgcgatgattatatttgcctggtaaggcaggtc
gggaaaatcgcagctgccaaagctactgacttgcctgttgacattgacgaacacacacta
aaagccactatcggagaaatgatgcagaaagatccaaaatttagagcaaatttggatagg
caatacaaaaacgttctggactcacacacgaacagtataaatacggcgtgtttgtctgaa
ggtttgctggagaagtttccttacaacaatctccaactcatggtacagtctggtgccaaa
gggtccactgttaacactatgcagatttcatgcttgcttggtcaaatagagttagaaggc
aaacggccaccgctcatgatatctggtcggtcgcttcccagttttccaccttacgacatt
tctccaagagctggtgggtttatagatggccgcttcatgactggaattcagcctcaagag
ttcttctttcattgcatggctggccgtgaaggtctcattgataccgccgtcaaaaccagc
agatctggttatctacagaggtgcttgattaaacatcttgaaggtttgagcgtcgcttat
gaccatacggtacgagacgcagacagtagcgtcattcagttcgcctacggagaagacggc
ttagatgttctaaagtgccagtacctaaaagagaatcaatttcaatttctcgacatcaac
tccaatgctgttgtaagtccatcaatcatcaaaaagctgaaagaagacgcggatacaaaa
tcgatcgctaaagcgcaaaaatcgctaaagaagtggataaaaaagcatggcgatccaaat
gagaaagtacggatcagcccgttcgcagagttctcgaaagtggctagaaatactattgaa
ctagacgacaaaccaaccgatcaaactagagatccatattattgggagcttgagaaaatg
tggcgtgatctaaacgaggaggaccgacaacaatacgccaaaaaatcatgccctgatccg
attccaagcaaactatcgccagaatacaaattcggagtaataagcgagcagctggatagt
attattcagaattacttgaaaaatcgcaaagaaaatccatacatggaaagaacagaaaaa
gacaagtttgtagaaattatgaatgctaaatatttggaatcgatggcggcaccaggcgag
cctgtaggtatgcttgctgcccaatctattggagaaccctccactcagatgacactgaac
acgttccatttcgccggccgcggtgacatgaacgttactctcggtataccgcgtttacga
gaaatcctcatgactgcttctgctaagctgaagacacccaacatggacataccattcaaa
gaagtcccgaatctaaataagaaagccgagaggctaagacagaaacttaacagagtgacg
gtcgctgatgttttggaaaaaatagacgtgcaatgtgaaattgtaacggaacctgatagg
caattgaagacaactatgcgtttctcttttctacctaaagcgcagtacaagacccaatac
atagtgaaaccggctcaaattataaagcatatgcaaagaaagtttttcggcgagatgttc
agtactataaaaaaacaggctaaagcaacgagcggggttttgtggtcggcggaaaagaag
tcaaggcagcggaaacgagatgatgatgacgatgataatgatgagggcgaggctccgatt
gcgagagacgctgaacttgatcctgatgttaacagctctgatgaagaagaaccaaatgat
gatgatgatactactcaggtaaagaaccgtaacatgcacgcagaggagcaagaatacgaa
gatccagagtcgggagaagaggacaagtctgacgacgaagtagagattgatgaacaggct
aaagaaaatgacgagatggaacaagaaccaattaaggacaacatcacagaaaaagacact
aaagcaatgacggaagtcgtcgaaaacatccaaagcgctaccaactacagcttcgacacg
aaaaatcacgaatggtgtgagttgacagtcctgtttcccatcacattcctgaaagtggac
ttgtctcaagccctcagagacactgccgcaaggtccgttatacacgaagttaagaacata
aagagagccatcaccaacagagagaaagacgttctctatctcaaaacagaaggtataaat
attgttgaaatgttcaaatacaatgatttgttgctggtaaacaaactatatagtaatgat
attcatgctatcgcgcgtacatacggtatagaagcggcgaacaaggtaattataaaggaa
attcagaacgtgtttaacgtctatggtatcacagtggatcctagacatttgactttagta
gcggattatatgacttataatggagtgtttgaaccgatgagtagaaaaggtatggaatcg
tcgacttcgccacttcagcagatgtcttttgaatcgtcattgatatttttgaaagaggct
gtgatgaatgctaagtgtgacaagattcaatcggcgtccgcttgtctcatgttgggccag
ccttgccgcagtgggaccggcgcgtttggactccaaggcccattgctaacgaaaactagt
aagaaaaaaaagtttagcagcgatgacgaatag
DBGET
integrated database retrieval system
