Choristoneura fumiferana (eastern spruce budworm): 141436827
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Entry
141436827 CDS
T11020
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14296
nuclear pore complex protein Nup153
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03013
Nucleocytoplasmic transport
cfum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141436827
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
141436827
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141436827
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
141436827
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
141436827
NCBI-ProteinID:
XP_073956010
LinkDB
All DBs
Position
Z:complement(40076272..40098002)
Genome browser
AA seq
1349 aa
AA seq
DB search
MNIVFPKNKEKRSRTSSGESNNSFVKNMTSRVSGLLPATITKWFSSPKSSANGSAPAADA
TDSSTEDEAPESPASQPPAKRMRYSPGAVYGNTDANCVTNNIETIEPSTSFTVQSPPGRT
TFRRETNYVSTPIRSPDDTIDRTDKDSTATFQQHTVTTIGPSVAKKRKSLFGNQSQELSD
ASKKAYVKTSNNTVKDPKQPSFKPTLLGSPFYAGRTTYGGAASSYINQPNITHRQNTTVR
ESPTTSDNNISHSARRVMELLESYSSPLTEAKRIPHYTRPTKHDLMKRISESSVSSSINK
INSFKTQELHVSSIASILRLKQRSRLNDTTNAARQLIASHSSTSPDYRPYPSASKSDQKE
TDGSNKLTTKVKSRLTRPARGDTNALDTETLPPVDLPNAILQIDPSNLPDFGSPLATKTT
LSQKPSLTATYSSSIFEKKSTPAVEIKSIETVPSSSIYNFANPVRITSESPKTTTTPPKF
TFGSPERKIDEQLTSENKSSEPLKPVAAAAKENKAETAPANWSCPDCWVSNKHDADKCVC
CGYKHVAKPSSKPKCTLCKLADSQANSDKCVNCDKVQVNNISKPLKADTSKWKCEDCWVS
NDEAADKCACCGAKNPKGASQVVPVKPAEPSSGMCPKCFAVTTNGKCGKCTQVSSTPDKN
FKTVLKAQSNKWECEHCLVRNDSDKTRCVCCEADRSGKPKEPENKQFNFGTINTTFKFGI
DPKVQEANLAKAAEKPAETKDKIEESETNNNVLAKAPTFSFGIPAKKSEDQPDASKEKTD
ETPKATFTFGLPKQNSVAPTPAPMFGIPSKVNDTPKEKEKDEAETKTQEVKAVEEAPKQP
VVMFGATSTPAVTSAAPSQPILSTSFTLEKKEAPSNPLSLPTTSVSAPAPTLSFAAPKPA
TGGLFGAIATTAAPASVNFAPITTPATTATMFQKTDTAPKPLSMFQKSDPATTATVSLFQ
KSEAPATAAAPPSAATAPMFSFGSTQSAQPQTDKPKFSFTFGGNKTDNVFKPPTFGGTDP
NNAMNKFILGSATDNPMGASNPLASGNSLAGNSLAGNSLTGNNLTGNSLTGNSLTGNTMT
SNSIASNPLSGNGMQAAAPAATGMFGSVPKENMWSPPNSSTPNPFVANASTNNAPKPFAF
GSSTPFNAAAAPAFGGVNTQTSTTPAFGAAKMTFGGASQPPAFGAASPPAPAFGSNVQST
PSIFGMNNQNNQPSMFSTPAQNSTGMFGSPQQPAAGSMPPPSVGMFGRPSVGAAPTFGTP
NSSIPNFEAPSLTPAQAPAFNFGSTPTSNIFGFGQQQPQQPGGLGGGQTGVYSFGVAPGA
QAPVQFNMGSAPNAAGRRVRKAVRRSSQR
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcgtctttccaaagaacaaagagaaacggagccgaacatcgtctggtgaatcc
aacaattcgttcgtgaagaatatgacgtcgcgtgtgtcgggtctgctcccggcgacgata
acgaagtggttcagcagccccaagtcgagcgctaacgggtcggcgccggccgccgacgcc
acggactcctccacggaggacgaggcgccggagagccccgccagccagcccccggccaag
cggatgcggtacagccccggcgctgtgtacggcaacacagacgcgaattgcgtcacaaac
aatatagaaaccatagagccgtcgacgtcattcacggtccaatcaccgccgggccgcacc
accttccggcgggagaccaactacgtgtccacaccgatccggtcgccggatgacaccatc
gatcggacggacaaagacagcaccgccaccttccagcagcacacagtgacgaccatcggc
ccaagcgttgctaagaaacggaaatcgctcttcgggaaccaatcgcaggaactcagtgat
gcttccaaaaaagcgtatgtgaaaacatcaaacaacacagtgaaggatccaaagcagcct
tcgttcaagccgacacttctcggctctccgttctacgccggccggaccacgtacgggggc
gcggcgtcatcctacatcaaccaaccaaacataacacatcgacagaacacgacggtcaga
gagtcgccgaccacaagtgacaataacatcagccactctgcgaggagggtcatggaactg
ctggaatcatactcttcacctctaacggaggccaagaggataccacattacacaagacca
acaaaacatgacctaatgaaaaggatatcggaaagctcggtgtcttcgtccattaacaaa
attaactccttcaaaacgcaagaactccacgtgtcaagcatagcatcgatactgcggctg
aagcagcgatcgcggctgaatgacaccacaaacgcggcgcggcagctgatagcctctcac
agcagcacatcgcctgactaccggccttatccgtccgcctccaagagcgatcaaaaagag
actgatggcagcaacaaattaactacaaaagtaaaatcgagactgacgaggcccgcaagg
ggcgacactaacgctctggacacggaaacgttgccgccggtggacttgcccaatgccatt
ttacaaatcgaccccagtaacttacccgacttcggcagcccactggccactaaaacgacc
ttatcacaaaaacccagcttaacagctacatactcttcgtctatattcgagaaaaaatcg
accccagccgtagaaataaaaagcatagaaacagttcctagtagcagtatttataatttc
gccaaccccgtcagaataacaagtgaatctcctaaaacgacgacgacaccgcctaaattc
acgttcggcagcccggaaaggaaaatagacgaacagctcacgagcgaaaacaaaagctcc
gagcctctcaaacccgtagccgcggcagcgaaggaaaacaaggcagagaccgcgccagcg
aactggtcgtgtcccgactgctgggttagcaacaaacacgacgccgacaaatgcgtctgc
tgcgggtacaagcacgttgctaaacccagcagtaaacctaaatgtaccctctgcaagcta
gctgacagccaagcgaactccgacaaatgcgtcaactgcgacaaagtacaagtcaataac
atctccaagccactcaaagccgacacgtccaaatggaaatgcgaggattgttgggtgagc
aacgacgaggctgcagacaaatgcgcctgctgtggcgccaaaaaccccaaaggtgccagc
caagtcgtccccgtgaagccggccgaaccttccagcggcatgtgcccgaaatgttttgcc
gtcaccaccaacgggaagtgcggcaagtgcacgcaagtctctagcacgcctgacaaaaac
ttcaaaacagtactaaaagcccagtccaataagtgggaatgtgaacattgtttagtaaga
aacgatagtgataaaaccagatgcgtttgctgcgaagcggaccgctccggcaaacccaaa
gaaccagagaacaaacagttcaatttcggtactatcaacaccacattcaaattcggtatt
gatccgaaagtccaagaagccaatttggccaaagcggcggagaaacccgcagagactaag
gataagatagaggagtccgaaactaacaataacgtgcttgcgaaagcaccgactttctca
ttcggcataccagctaagaaatcggaagatcaaccggatgcctctaaagagaaaacggat
gaaactcccaaggccacctttacttttggcttgcccaagcagaactccgtggcgccgacc
ccggctcccatgttcggcattcctagtaaagtcaatgatactccaaaagaaaaagagaaa
gacgaagccgaaactaaaacccaagaggtgaaagccgttgaagaggcgccgaaacaaccc
gtcgttatgtttggagcgacgtcgactcctgccgtcacttctgccgcgcccagccagccg
atcttgagcacgtcgtttactctagagaaaaaagaagctccaagcaaccccctcagctta
ccaacgacgagcgtttcggccccggcgccgacactcagtttcgcggcgcctaaacctgca
accggcggcttgttcggggccatcgcgaccacggccgcaccagccagcgttaacttcgcg
cctataactacgccagctacgacggcgacaatgttccaaaagactgataccgcacccaag
ccgctgtcgatgttccaaaagagcgatccagcgacgacggccactgtgtcgctgttccag
aagagcgaggcgccggcgaccgcggccgcgccgccgtccgccgccaccgcgcccatgttt
agcttcggtagcacccaatctgctcaaccgcaaaccgacaagcccaagttcagcttcacg
tttggtggcaacaaaaccgataacgtgttcaaaccgccgacgttcggaggcaccgatcct
aacaacgccatgaacaagttcatcctcggcagtgcaactgataaccctatgggagcgtcg
aatcctttagcttctggtaacagtttagccggcaatagcttagctggtaatagtttgacc
ggtaacaatttgaccggtaacagtttgactggtaacagcttgactggcaacacgatgacg
agtaacagtatcgcgtctaatccattgtccgggaatggtatgcaagctgccgcgcccgct
gccactggtatgtttggttcagtgccaaaggagaacatgtggtcgccacctaacagcagc
acgccgaatccgttcgttgcgaacgcgtcaacgaacaacgcgcccaaaccgttcgcgttc
ggtagttcgacgccgttcaatgcggccgccgcgccggctttcggcggcgtcaacacgcaa
acgtcaacgacgccggcgttcggcgctgccaagatgacgtttgggggcgcgtcgcagccc
ccggccttcggggccgcgtcgccgccggcgcccgcgttcggctccaacgtacaatcgacg
cctagtatcttcgggatgaataatcagaacaaccagccgtcgatgttctcgacgccggct
cagaactcgacgggcatgttcgggtcgccgcagcagccggccgcgggcagcatgccgccg
ccctccgtgggcatgttcgggcggcccagcgtgggcgcggcgccgaccttcggcacgccc
aactcctcgatacccaacttcgaggcgccttcgctcacgccggcgcaggctcccgctttc
aatttcggctccacgccgacttcgaacatcttcggatttggacagcaacaaccgcagcag
cctggcggcctaggcggcggtcagacgggcgtgtacagtttcggcgtcgcgccgggagcg
caggcgccggtccagttcaacatgggcagcgcacccaacgcagccggccgcagggtccgc
aaagccgtccgccggagctcccagcgatga
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