Choristoneura fumiferana (eastern spruce budworm): 141436885
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Entry
141436885 CDS
T11020
Symbol
syd
Name
(RefSeq) LOW QUALITY PROTEIN: JNK-interacting protein syd
KO
K20317
c-Jun-amino-terminal kinase-interacting protein 4
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141436885 (syd)
Membrane trafficking [BR:
cfum04131
]
Endosome - Golgi transport
Others
Others
141436885 (syd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_2
JIP_LZII
Beta-prop_LRRK2
RH1
Reg_prop
Motif
Other DBs
NCBI-GeneID:
141436885
NCBI-ProteinID:
XP_073956088
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Position
Z:39915660..39963584
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AA seq
1222 aa
AA seq
DB search
MNFEDSASSGYVTAETIYGTHEDSHVVMSEKVQTLAGSIYQEFERMIARYDEDVVKTLMP
LLVNVLECLDSAYQTNQEHEVELELLREDNEQLVTQYEREKTSRKHAEQKLLEAEDHYEG
ERKELTSRLESLDSIVRMLELKHKNSLDHASRLEERENELKVEYAKLHVRYTDLFKTHMD
YMERTKLLMSTASERSEVRGRLGLNPVGRSSGPISFGFASLEGSVHIVEQTESIPGSPTS
LSSSPPSPTIGSELAAVRTVERAHQTDPITQQSQATSPVAPPNASSVSKSQTKSEKRSGN
TLYQELAFHDTDASMAEGDDGADITGSWVHPGEYASSVNDNYFGMGKEVENLILENNELL
ATKNALNVVKDDLIVKVDELTGEQEILREEVANLCATREKLRERVTQLEEELRRLKETVS
NSAGGENEDEADVPMSQRRRFTRVEMARVLMERNQYKERFMELQDAVRWTEMVRASRVDS
TMDKKNKQSIWKFFSNLFSTERPQRPLSTPHLRAVTAPQTALRHSRTQADFLETQLTDHH
HRKHERTEQFRQVRAHVRKEDGRTQAYGWSLPGKTGQGQKGPSPCTSLSSGGVPVPVPVF
CRPIAESEPRMTLLCAAGVNLSGGRTPDGGCMVGESVFYSKDDEKSDNTMCLAEEMSKAT
LHSPEVEQINRQLQSTQNAGRAEQSLSSLVWICSSTQTKGVVMIIDANNPAEVMESFPLA
DKHILCVASVPGAVAEDYREYEQRMAGGDERHEALFNTGKSESMDNQSNGLPGAGGNENG
EKEVVVGATKLVQATLLTPPSTPVKEPEPEPVAPPRESTVKNVEEPDSTAPDSPPLSSTP
VNNEHLGSPEPGVDAFAEEQSQADNREDVPDRKMSTVMATMWLGTKSGNLYVHSAMGNYS
KCLARVKLNDAILAIVACSSRCVVALADGTVAMFMRLADGQWDFTQYWLLTLGDPKCSVR
CLAAVGCTVWCGYRNKVHVLDARARLLLHSLEAHPRQESQVRQMACDGDGVWVSIKMDST
LRLYHAHTYQHLQDVDIEPYVSKMLGTGKLGFSLVRITALLISAGRLWIGTSNGVVISVP
LSEGGGRDSGANSLSLAPAGSVSASGAATSPAGALPWCSMAHAQLSFHGHRDAVTFFVAV
PGASSPSAPSPPXPIAPSPPPARRATHPMLVVSGGEGYIDFRIADSEMEDSVVVAEDGSS
SGHSSLERASKSHLIVWQVATA
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgaatttcgaggacagcgcgagtagtggctatgtcacggcggagacgatatatggcacg
cacgaagattctcacgtagtgatgtcggagaaggtgcagacgttggctgggagtatttac
caggagttcgagcgcatgatagcgaggtacgacgaggatgtcgttaagaccttgatgccc
ctgctggtgaacgtcctggagtgcctggactccgcgtaccagacgaaccaagagcatgaa
gtggagctggaactgctgcgagaagacaacgagcaacttgtgacgcagtacgagcgcgag
aagacttccaggaagcatgcggaacagaagcttctagaagccgaggatcactacgaaggc
gagcggaaggagctgaccagccgcttggaatcgctggacagcatcgttcgtatgctggag
ctgaagcacaagaactcattggaccacgcgagccggctggaggagcgcgagaacgagctt
aaagtggaatatgcgaagctccacgtccgctacacggacctgttcaagacccacatggac
tatatggagcggacgaaactcctcatgagcacggcgagcgagcggagcgaggtgcggggg
aggctcgggctcaaccccgtcggcaggtccagtggcccgatatctttcgggttcgcgtcc
cttgagggttccgtgcacatcgtggagcaaacggagagcatccccggcagcccgacgagc
ctgtcgtcgtcgccgccgtcgcccaccatcggctcggaactggccgcggtgaggaccgtc
gaacgcgcccaccagactgaccccatcacgcaacagagccaggctacgtcccccgtcgcc
ccgcccaacgcctcgtccgtgagcaagtctcaaaccaagagcgagaagcggagcggtaac
accctgtaccaagagctggcgttccatgacacggacgccagcatggctgagggcgatgat
ggcgctgacatcactggaagttgggtgcaccctggcgaatacgcatcatctgtaaacgac
aactacttcggtatgggcaaagaggttgagaatttaatcttggaaaacaacgaattgctg
gcaacaaaaaatgccctgaatgtggtcaaagacgacctaatcgtcaaggttgacgagttg
actggagaacaagagatattgagagaggaagtggcgaacctgtgcgcgacgcgagaaaag
ctcagggagagggtgacgcagctagaggaagagttgagacggttgaaggagacggtgagc
aacagcgcgggcggcgagaacgaagacgaggccgacgtgcccatgtcccagcggcgacgg
ttcaccagggtcgaaatggcgcgtgtcctgatggagaggaaccagtataaggagcgtttc
atggagttacaagacgcagtgcgctggacggaaatggtgcgcgcgagtcgcgtggattcc
accatggataagaagaacaagcagagcatctggaagttctttagcaatctctttagtacc
gagcgtccccaacgtccgctgtccaccccgcacctccgcgctgtgaccgcgccccaaacg
gcgctgcgtcactcgcggacacaggccgacttcctggagacacagttgactgaccaccac
cataggaagcacgagaggaccgagcagtttagacaggtccgcgcccacgtgcgcaaggaa
gacggtcgcacgcaggcgtacggttggagcctcccgggcaagaccgggcagggccagaag
gggcccagtccatgcacgtcgctttcctccggtggggtgccagtgcccgtgccagttttc
tgcaggccgatagcggagagcgagccgcgcatgacgctgctgtgtgcggctggtgtgaac
ctgagcggcggccgcacgcccgatggcggctgtatggttggtgagagcgtgttctactcc
aaagacgacgaaaagtctgacaacacgatgtgtttggcggaagaaatgagcaaagcgacg
ctgcattcaccggaagtggaacagatcaaccggcagctgcagtcgacgcagaacgcgggc
cgcgccgagcagagcctgtcctcgctcgtctggatctgctccagcacgcagaccaagggg
gttgtcatgataatagacgcgaacaacccggcggaggtgatggagtcgttcccgctcgcc
gacaagcacatcctgtgcgtggcgtccgtgcccggcgccgtcgcggaggactaccgcgag
tacgagcagcggatggccgggggggacgagcggcacgaggcactgttcaacacgggtaaa
agcgaatctatggacaaccaaagcaacggtctgcccggcgccggagggaacgagaacgga
gagaaagaggtcgtcgtcggagccactaaactggtgcaagccacgctccttacgccgccg
agcacgccggtcaaagagccggaaccggagccggtggcgccgccgcgcgagtccaccgtc
aaaaacgtggaggagccggactccactgccccggacagcccgccgctcagctccacgcct
gtcaataatgaacacctagggtcccccgagcccggcgtggacgcgttcgcggaggagcag
tctcaagcggacaaccgcgaggatgtccccgaccgtaagatgtccactgtcatggcgact
atgtggctgggcactaagagcggcaacctctacgtacactcggctatgggcaactacagc
aagtgcctcgcaagggtgaaactgaacgatgccatcttggcgatagtggcgtgctcgtct
cgctgcgtggtggcgctggcggacgggacggtggcgatgttcatgcggctcgccgacggg
cagtgggacttcacgcagtactggctgctaacgctgggggaccccaagtgctcggtgcgc
tgcctggcggcggtggggtgcaccgtgtggtgcgggtaccgcaacaaggttcacgtgctg
gacgcgcgagcgcggctgctgctgcactcgctggaggcccacccgcgccaggagagccag
gtgcgccagatggcctgcgacggggacggcgtctgggtgtcaataaagatggactcgact
ctgcgcctctaccacgcccatacttaccagcatctacaggacgtggacatcgagccttat
gttagcaaaatgctcggtacagggaagctgggcttctctctggtgcgcatcacggcgctg
ctgatcagcgcgggccggctctggatcggcaccagcaacggcgtcgtcatctccgtgccg
ctgtcggagggcggcggccgggattccggcgccaactcgctctcgctcgcgcccgccgga
agcgtgtctgcgtccggcgcggcgacgtctccggcgggcgcgctgccgtggtgctcgatg
gcgcacgcgcagctgtcgttccacgggcaccgcgacgccgtgacgttcttcgtggcggtg
ccgggcgcgtcgtccccctcggccccctcgccccctncgcccatcgccccctcgccgccc
cccgcgcgccgcgcgacacaccccatgctcgtcgtctccggcggggagggctacatcgac
tttaggatagccgactcagaaatggaggacagcgtggtggtagccgaggacggttcctcg
agcggccacagttcgctggagcgggcttccaagagccatttgatcgtctggcaggtggcg
accgcctaa
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