Choristoneura fumiferana (eastern spruce budworm): 141436965
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Entry
141436965 CDS
T11020
Symbol
RPA1
Name
(RefSeq) replication protein A 70
KO
K07466
replication factor A1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03030
DNA replication
cfum03420
Nucleotide excision repair
cfum03430
Mismatch repair
cfum03440
Homologous recombination
cfum03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141436965 (RPA1)
03420 Nucleotide excision repair
141436965 (RPA1)
03430 Mismatch repair
141436965 (RPA1)
03440 Homologous recombination
141436965 (RPA1)
03460 Fanconi anemia pathway
141436965 (RPA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfum03000
]
141436965 (RPA1)
03032 DNA replication proteins [BR:
cfum03032
]
141436965 (RPA1)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141436965 (RPA1)
Transcription factors [BR:
cfum03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
141436965 (RPA1)
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
141436965 (RPA1)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
141436965 (RPA1)
MMR (mismatch excision repair)
141436965 (RPA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
141436965 (RPA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
PglZ
Motif
Other DBs
NCBI-GeneID:
141436965
NCBI-ProteinID:
XP_073956216
LinkDB
All DBs
Position
17:complement(9479062..9489033)
Genome browser
AA seq
600 aa
AA seq
DB search
MSSQLSQGSLEIIMNGGHYDKPIMQVLGSKKIQGSGANERFRLLVSDGKHSHSFAMLATQ
LNDKLITGELSDYSVVQIDRFVTSLLKNTGKGEKRVMIILDITIIKPGSEVGKKLGNPQT
WTEETAASAPAQTTMQPAPKVAALPTQSANQVTSMDTSSLASQMTHPIASLSPYQNKWVI
KARVMSKSPLRTWSNAKGEGKLFSMDLCDESGEIRATAFRNECDKFFDMIQVDKVYYISR
CQLKTANKQFTSLKNDYEMTFNADTVVSECQDDASSVPTIKYDFVPINEIADKATDSLLD
VIGVCRAAADVQELTARSTGKLLKKREVTVVDSTGGAVSLTLWGNEAENFDGSTNPVVAA
KGARLTEFNGSKSLSCLASTMIRLNPDLPEAHKLRGWYDNGGDKMDVVNISARTGTYGGG
SNEWITFSEAEAKQLGSGDKGDYYSMLGVLTFTFTDNAVYKACPQEQCNKKLVDQENGLF
RCEKCNREYPNFKYRLLLGANVSDPTGDQRITAFNESAEAMIGKSSADIGRMFEYDKTGY
TALFEDIKFRTFVFKFRTKMETYSDEARLKTIVVSAQPVDYKDGNARLLKSIKAVTGVEV
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccaactgtcgcagggctccctcgaaattattatgaatggcggtcattatgac
aagccaataatgcaagttttgggcagcaaaaaaatccaaggaagtggtgcaaatgagcgg
tttaggctgctggtgtccgatggcaaacattctcacagcttcgccatgctggcgacgcag
cttaacgacaagctgatcaccggggaactgtctgattactctgttgtacagattgacaga
tttgttacttctctattgaaaaacacagggaaaggtgaaaagcgagtaatgattatctta
gacattacaataattaaaccagggtccgaagtaggcaagaagctgggcaacccacagacc
tggacagaggagactgcggcatcagcccctgcgcagacaaccatgcagcctgcaccaaaa
gttgcagctttaccaactcaatcagcaaaccaagtgacgtccatggataccagctcattg
gcatcacaaatgactcatcctatagcaagccttagcccatatcaaaataaatgggtcatt
aaggcgcgcgtgatgagcaagtctccactccggacatggagcaatgcaaaaggtgaaggc
aagctatttagcatggacctgtgtgatgagagcggggaaatccgggccactgccttccgg
aatgagtgtgacaaattctttgatatgattcaggttgataaagtatactacatcagtcgc
tgccagcttaaaaccgctaacaagcagttcaccagtttgaaaaatgattatgaaatgaca
ttcaacgctgacacagtcgtgtccgagtgccaggatgatgcttcgtctgtgcctacaata
aagtacgattttgttccaatcaatgaaattgcggataaagccacagattcgttacttgac
gtgattggagtgtgtcgggctgccgccgacgtccaagagctgaccgcgcggagcaccgga
aagcttctcaagaagagagaggtcacggtggtagattccactggtggcgcggtgagcctg
acactgtggggcaatgaagctgagaattttgatggctctaccaaccctgtggttgcagcg
aagggcgctcgtctaaccgagttcaacggcagtaagtcgctctcctgtctggcttcgacc
atgatccgcctaaacccggacttgcctgaagcacacaaactgcgcggctggtacgacaac
gggggcgacaaaatggacgtcgttaacatctctgcgagaaccggtacctacggcggcggc
agcaacgaatggatcacattctccgaagcagaggccaaacaactcggctccggggataag
ggcgattactacagcatgctgggagtgctaacattcacgtttaccgacaatgcagtgtat
aaagcatgccctcaagagcagtgcaacaagaaactggttgatcaggagaatgggctgttc
agatgcgagaagtgtaacagggaataccctaatttcaagtatcgactgctgctaggggct
aacgtatctgacccgactggcgaccaacgcatcacggcgttcaacgaatctgccgaagct
atgatcggcaagtcctcggccgacattggacgtatgttcgagtacgacaagactggatac
acggctttattcgaggacatcaagttcaggactttcgtgttcaagttcagaacaaagatg
gagacttatagcgatgaagcacgtttgaagaccattgttgtaagcgctcaaccagtcgac
tacaaagatgggaacgcccggctactaaagagcattaaagctgtaactggagttgaagtt
taa
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