Choristoneura fumiferana (eastern spruce budworm): 141436978
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Entry
141436978 CDS
T11020
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03440
Homologous recombination
cfum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
141436978
03450 Non-homologous end-joining
141436978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfum03032
]
141436978
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141436978
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
141436978
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
141436978
BRCA1-C complex
141436978
NHEJ (non-homologous end-joining)
MRX complex
141436978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_29
AAA_16
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
141436978
NCBI-ProteinID:
XP_073956234
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All DBs
Position
17:complement(5303893..5329170)
Genome browser
AA seq
1299 aa
AA seq
DB search
MAGIKSLAVRGIRSFGPDKSDEQSISFHTPLTLILGQNGCGKTTIIECLRYAITGQMPPG
SKDECFVHDAKVNKSTEVLGEVKLEILSPNDEQLEVSRAMRVTALPDRKVKFQTLSSKMK
LTNEHGDSRDVTLDMDVRMSDTLGVSNAILNSVIFCHQEDSTWPLDDGQKVKERFDEIFD
SEKYSECFEHLKKLRKEYSHEIKSLEQEVDYLFVKKEELEKKKVDVENTEALITEVNTRV
EELSKELEGVTAKLDSIKTIEKSIVGLENKRDKIKVKLENFQTQEQEMKKIIKTIFEGTV
EELNENINTYDQTVKDKQKELIEIYERKSAFDKEREKIENEMTYNKVKLNEFTFLENQNK
EKVEKRNKLLEEAIVLAEMESKSIETDEEADKTFKALQQKVKELNKDLATTQSQADDEAN
KLQSHVNTSRDALSRHNEKISNKEIDIETAKKQILKKENEINDANVSRSRLEEIETKLKA
AETEYQNAVSEVNTEDLQKEMGDDEKLIEQHEKELEELSQKITKLQKQTAKLAERNTIER
SLKDKQEQLTSLLTKHSTAITELLGVMPEQDFALAINKLESETRGEVKGIKQKLKEKQKE
LTSVETERKMVVEMLSEKRAEIVKSDAKIRKACGTQTYDEVLAEVTNLVEVLQEKQAVLQ
ASTVVIDKYKGQLKDTSCCPLCSRGFNSDDEVADLISQLGKQVLNVPAELEKVTEELQRT
SAKKDELLALKNLNSKIAGLKEKEREIATRLEGLDEKIKTLQAGVGEFTAALKGPEQKMV
TAKQVQGEMPLLDRVKTEIAIAAKNLEELNSEGEAIESDVTLEDATARQRDLRHEVSALR
TRVRNSQKKLNAHTRKVQLKGEAKNKLNEKLLTIQKKVQGICTLQDAIKQLEEDKERCNA
ELKELQASTDSFKKDLQDKEDAKTDAVKKNRLIIESKRNYIAKVVKSVDKIKTVLSELKQ
HEEKKIPLQMKMFNELNDKLSEKRKQILIDESVLGKRRHILRDEIAKQEINQRDLQDNLK
LRGIQTEIANCEKDMSEITEKTNGFNMDLLTEKGDLVAKEKQISKEREQNRGKLSAHKER
LKQCKQDLQEMEDQGIERNYRQKYNELIVARAVKKDVKDYSMALEKCLLEFHKEKMKNIN
LIVREMWRKIYRGNDIDYIEIKTDGGLAEDLERYKYNYRVVQCKNGVEIDMRGRCSAGQK
LLACLIIRLALAETFSTRFGVLALDEPTTNLDEENVKYLCMALNEIVQDRMSQKNFMFII
ITHDKDFIDSLGHIDQVSHYYEVSRNGEGKSEVKKVCFS
NT seq
3900 nt
NT seq
+upstream
nt +downstream
nt
atggctggaattaaatccctcgctgttagaggcatacgaagcttcgggccggacaaaagc
gacgagcagagcatctcatttcatacacctttgacgcttatattgggtcaaaatggttgt
ggcaaaaccacgattattgagtgtttacggtatgccatcaccggacaaatgccgccagga
agcaaagacgaatgttttgtgcatgatgccaaagttaataagtctacagaagtgctggga
gaagtaaaattagagatcttgtctccaaatgacgagcaattggaggtgtcccgggccatg
cgtgtcacagcgctacctgacaggaaggtcaagtttcagaccctcagctccaaaatgaag
ctaaccaatgagcacggagactccagggatgttacattggacatggatgtccggatgagt
gacacactgggtgtctccaatgctattttgaattctgtcatattctgccaccaagaggat
tccacttggccactggacgatggacagaaagtgaaggagcgttttgatgagattttcgac
tctgagaagtacagcgaatgctttgagcacctgaagaagctgaggaaggaatacagccat
gaaatcaaatcgcttgagcaagaagtagactacctgtttgtgaagaaagaagaattagaa
aagaaaaaagtggatgttgaaaacacagaagcattgattactgaagttaacactagagtg
gaggagctctcgaaagaattagagggagttacagcaaaactggactccataaagaccata
gagaagagcatagttggcttggaaaataagagggataaaattaaagtgaaattggaaaac
tttcaaacacaagagcaggaaatgaagaaaataatcaagactattttcgaaggaacagta
gaagaattaaacgagaacattaatacatatgaccaaacagtgaaagacaaacaaaaggag
cttattgaaatatacgagagaaaatctgcctttgacaaggaaagagagaagattgagaat
gagatgacatacaataaggttaagctgaatgagttcacattcctagagaaccagaataaa
gagaaggttgagaaaaggaataaactcttggaggaagctattgtgttagctgaaatggaa
tcaaaatctatagagacagacgaagaagcggacaagacgttcaaagcactgcaacagaag
gttaaagagctgaacaaggatttggccaccactcagtcgcaggccgatgatgaggccaac
aaactgcagtctcacgtcaataccagtcgagacgctttgtcacgtcacaacgagaagata
tcaaacaaagagattgacatagaaacagcgaagaaacagatactgaagaaggaaaatgag
atcaacgatgcaaatgtgtccaggtcgaggcttgaggagattgaaactaaacttaaagct
gcagagactgaataccaaaatgcagtaagcgaggtaaacaccgaagatctccaaaaggaa
atgggagatgatgagaagctgatagaacagcatgagaaggaattagaagagctcagtcaa
aagataaccaaactccaaaagcaaacagccaagctagccgaacggaacaccatagagcga
tcactaaaagacaagcaggagcagttgacgtcactattgacaaagcatagcactgccatc
actgaactgctgggtgtgatgccagaacaggatttcgctctggccatcaacaagttggag
agtgagacgaggggtgaagtgaaggggattaaacagaagttgaaggagaaacagaaagag
ctaacgagtgtagagaccgaacgcaagatggtcgtcgagatgttgtctgagaagcgggct
gaaatcgtaaagtcggatgctaagatcaggaaggcttgcggcacacagacttatgacgag
gtgctggctgaggtcactaacctcgtggaggtgttgcaggagaagcaagccgtactccaa
gcatcgacggtggttatcgacaagtacaaaggacagttaaaggacaccagttgctgtcca
ctgtgcagccggggcttcaactcggatgacgaggtagcagacctaatatcccaactgggg
aaacaagtgctaaacgttcctgctgagctcgagaaagtgacggaagaacttcaaaggaca
tcggccaagaaggacgaactgttagcgttgaagaaccttaacagcaagatagcaggattg
aaagagaaggagagagagatcgcgactagattagaaggacttgacgagaaaatcaaaact
ctccaagcaggcgtcggcgagtttaccgcagcactgaaaggaccagagcagaagatggtg
accgctaaacaggttcaaggcgagatgcctctcctggaccgagtcaagacagaaattgcc
atcgctgccaaaaatctagaggaactaaactccgaaggggaggcaatagaatccgacgtg
acgttagaggacgctaccgctaggcagcgggacttgaggcacgaggtcagcgccctgagg
accagagtgaggaactcgcagaagaaactcaacgctcacacccgtaaagtgcagctgaag
ggagaggctaagaataagctgaatgagaagttgctcaccatacagaagaaggtccaaggc
atctgcacccttcaagacgcgatcaaacagctcgaagaagacaaggaaagatgtaatgcg
gaactgaaagagctgcaagcgtccaccgatagcttcaagaaagacctgcaggacaaagag
gacgctaagactgatgccgttaaaaagaacagattaatcatagaatccaaacgcaactac
atagctaaagtggtaaagtccgtggacaaaatcaaaactgtactatcggaactaaaacag
cacgaagaaaagaagattccactgcaaatgaaaatgttcaacgaactgaacgataagctc
tcagagaagaggaaacaaatactgattgacgaaagtgtgctaggcaagaggaggcatata
ctgagggacgaaatcgcgaaacaagagatcaaccaacgagacttgcaagacaacctcaag
ttgcgaggcatccagacagagatagcgaactgcgagaaagatatgtcggagatcacggag
aaaactaatgggttcaatatggatctgcttaccgagaagggtgatctcgtcgccaaagag
aaacagattagcaaagagagagagcagaatagagggaaattgagtgcgcataaagaaagg
ctaaaacaatgcaagcaagatttgcaagaaatggaagaccaggggatagagaggaattac
cgtcagaaatataacgagctcattgtcgcgagggcggtcaaaaaggacgttaaggattac
tctatggcgctcgagaagtgcttactggagttccacaaagagaagatgaagaatatcaat
ctaattgtcagagaaatgtggagaaagatctatagaggtaacgacatcgattacatagag
ataaagactgatggcggcctagctgaagatttggaacgatacaaatataattacagagtg
gtgcaatgtaagaacggtgttgagatagacatgcgagggagatgtagtgcaggccagaag
ctgctcgcctgcctcatcataaggctagctctagcggaaaccttcagtaccagattcggc
gttctggccttggacgagcccacgacaaatctcgacgaggagaacgtgaaatacctctgt
atggcactcaacgagatagtccaggaccgtatgagccaaaagaacttcatgttcattata
atcacgcacgacaaagatttcatcgactccctcggccacatcgaccaagtgtcgcactac
tacgaggtatcaagaaatggtgaaggcaagtcggaggtcaagaaagtgtgcttctcgtaa
DBGET
integrated database retrieval system
