Choristoneura fumiferana (eastern spruce budworm): 141437277
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Entry
141437277 CDS
T11020
Symbol
Spt6
Name
(RefSeq) transcription elongation factor Spt6
KO
K11292
transcription elongation factor SPT6
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141437277 (Spt6)
03036 Chromosome and associated proteins [BR:
cfum03036
]
141437277 (Spt6)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
141437277 (Spt6)
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
141437277 (Spt6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
HHH_3
Spt6_S1
SH2
HHH_9
S1_RRP5
Tex_central_region
Tex_N
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
141437277
NCBI-ProteinID:
XP_073956643
LinkDB
All DBs
Position
17:16012053..16043446
Genome browser
AA seq
1704 aa
AA seq
DB search
MADFLESEAEESEVDSDEEQPAERKKPKRKAAVQSDDEEDDEDDEDRLREELKDLIDDEP
IEESGSDGEDSDAGPKKRKKSDDELDDRLEEEDYDLIEENLGVKVARNKFKRLRRLEDDD
SDNEAANDPELEREVIAEKLFVAGSDEEDENRSESAAPREVEYDEEGEDMESDADDFIVD
DDGKPIAKKKRKPIFTDASLQEGQDIFGVDFDYDEFEKYGEEDYDDEEEEDLDEYIEDDE
EEGDRRRTKKGKAKRPSKKSIFEIYEPSELKRSHFTDLDNEIRKTDIPERMQIREVPITA
VPEGSSELEDEAEWIYKQAFLKPSVSKADSQEARERTRRGSSTVVKIRQALDFMRNQTLE
VPFIAFYRKEYVQPELSINDLWKVYKYDAKWCQLKQRKENLLKLFENMRDFQLDKIMVNP
DAPIPENMRLIKDEDIERLKNVQTPEELRDVHTHFLLYYSSDLPEMQKVQRAKEKKREIE
EKKRAARAEAESHGEDPEEAAASVEAAPDEEEPVEVKYAARSGPYELCRRAGIEPLVKMF
GLTPEQFAENVRDNYQRHEVEQQPIPPLEAAAPFVGAIGSAQEVLRRAVYMCGVQLAREP
QLRGTLRDALRERATVSVRPTPRGLKEIDEGHACYIMKYLKKKPVRDLTGDQFLRLTMAA
EDKLLELTISEKIEGNTGPSYLDELKNLYQKDEFAASVQAWNDLRAEAVEIAFTKIVMPE
MRRELNAVLLQESKEYVLKCCRRRLYDWLKVAPYESRVSDDDDEEWDTANGLRVLSIAYV
PDRQHSAFACLVAGGGEVADHLRLPHLLYRRNAWDALERQNKEADMTALRRFILRKKPHV
IVIGGESREALTVKADVTEVVQQLVEDEQFPRLPVEIADNHVSKIYSNSIRGRNDFREYP
DILRQAICQARLLQDPLMEISQLCGHDEEILCFRYHTLQDQIAKEDLLEGIELEFVNRVN
EVGVDVNEAILTGRGTELLQFVCGLGPRKAQALIKLFKQTNQKLENRTQLVTFCHMGPKV
FINCSGFIKIDTSSLGDSTEAYIEVLDGSRVHPETYEWARKMAVDALEYEDEDANPAGAL
EEILEAPERLKDLDLDAFAEELERQGFGNKSITLYDIRAELNSRYKDLRVPYRSPTQEEL
FDILTKETPDSFYVGKLVLATVVGISHRKPQREMLDQANPVRNDETGLWECPFCHKNDFP
ELSEVWNHFDAGACPGQATGVRIRLDNDISGYIHIKNLSDRHVADPTERVRIGQTVHCRI
LKIDVERFSVDCSSKSSDLLDKNKEWRPNKDPYYDQEAEDKDVRRDKESKQTKERMQYVK
RVIVHPAFHNISFAEAEKLMENMGQGEVIVRPSSKGSDHLTVTWKVADGICQHIDVREEG
KENAFSLGRSLWIQGSEFEDLDEIIARYVTPMAGHARDLISYKYYKPLGGMRDKAEEILK
EEKSKNPNKIHYVFSAAKNHPGRFLLSYLPRARCTHEYVSVTPDGYKFRQRMFDSLGGLL
KWFKEHFREPPPSGTPVQRTPALRTPHGMSSMYHTPAAHTPAFHTPAHTPGPAYINTPYT
PSAQTPYMTPFATTPRQPDFLTPAAMPRHKPVPVPIYTEPSDWQKAAEDWVRHRTVRDTP
ATPRSSEGMSTPRQSNRTPRMDSRGTPRHDRTPHDRTPRHDARSTPRSHSGRQSRAQSVR
STPHTNTSPRSMSLGDATPLYDEN
NT seq
5115 nt
NT seq
+upstream
nt +downstream
nt
atggcggattttctagaatcagaagctgaggagagcgaggttgattctgatgaggagcag
ccagcggagcgcaagaaaccgaagcgcaaagctgctgttcaaagcgacgacgaagaggat
gacgaggatgatgaagatagactgcgggaagaattaaaagatttgatagatgatgaacct
atagaggaatcagggagtgacggtgaagattcagatgcagggcctaaaaagagaaaaaaa
agtgatgatgagttggatgaccggcttgaagaagaggattatgacctgatagaagagaat
cttggtgtcaaagtagccaggaataagttcaaacggttgagacgtctagaagatgatgat
agtgacaatgaagctgccaatgaccctgagctggagagagaggtcattgcggagaagctg
tttgtggctgggtccgatgaggaggatgagaaccgttcagagtctgctgcccctcgggag
gtggaatatgacgaggagggcgaggatatggagtcggatgccgacgacttcattgtcgat
gatgacggcaaacccatagctaagaagaagcgcaaacctatattcacagatgcttcacta
caagaaggtcaggatattttcggcgtggactttgattacgatgaattcgagaagtatgga
gaagaggactatgacgatgaagaagaggaagatttggacgagtatattgaagatgacgaa
gaggaaggcgacagaagaagaacaaagaaaggaaaagcgaaacgtccaagtaagaagtcc
atattcgaaatctatgagccgagcgaactcaagcgcagtcacttcactgatctggacaat
gagatccgcaaaacggacattccggagcgcatgcagatccgcgaggtgccgataacggcg
gtccccgagggcagctccgagctcgaagacgaggctgagtggatatacaagcaggcgttc
ctcaagccgagcgtgtccaaggctgactcgcaggaggcaagggagaggactcgtagggga
tcaagcaccgtcgtgaagatccgtcaagcattggacttcatgcgtaaccagaccctggag
gtgccgttcatagcattctaccgtaaagagtatgtgcagccagaacttagcatcaacgat
ctgtggaaggtctacaaatatgacgccaagtggtgtcagcttaagcagcgcaaggagaat
ttgctgaagctttttgagaacatgcgcgatttccaactggacaagattatggtgaacccg
gatgcgcccatccctgagaacatgaggcttataaaagacgaggatatcgagaggctgaaa
aacgtgcagacgccagaagagttgcgtgacgtgcacacacatttcctgctgtactactcg
agcgatctgcccgaaatgcagaaagtgcagcgggcaaaggagaagaagcgagagatcgag
gaaaagaagagagcggcccgtgccgaggccgagagtcatggcgaggaccccgaagaggcg
gcggcgagcgtggaggcggcgcccgacgaggaagaacccgtcgaagttaagtacgcggcg
cgttccgggccctatgagctttgtcgccgcgctggtatagagccgttggtcaagatgttc
ggactgacgccggagcagttcgctgagaacgtacgcgacaattaccagcggcacgaagta
gaacagcagcccataccgccgctggaggccgccgctccttttgtgggcgcgatagggtcg
gcgcaagaggtgctccgccgggcggtgtacatgtgcggcgtgcagctggcgcgcgagccg
cagctgcgcggcactctgagagacgcgctgcgcgagcgcgccaccgtcagcgtgcggccc
acgccgcgcggcctcaaggagatcgacgagggacacgcctgttacataatgaaatacctg
aagaagaagccggtgcgtgatctcaccggggaccagtttctgcggctgacgatggcagcg
gaagacaagctgttagagctcaccatcagcgagaaaatcgaggggaacacgggccctagc
tatttggatgagctgaagaacttgtaccagaaggacgaattcgcagcttcagtacaggcc
tggaacgacctgcgagcggaggccgtggagatagcgttcactaaaatcgtgatgcccgag
atgcggcgcgaacttaacgcggtgctgttacaggagtccaaggaatatgtgctcaagtgc
tgccgccgccgtttgtacgactggttgaaagtagccccgtacgagtccagggtttctgat
gacgacgacgaggaatgggacactgcaaatggtctgcgggtgctctcgatagcatatgtg
ccggaccggcagcacagcgcgttcgcgtgcctcgtggccggcggcggcgaggtggcggac
cacctccggctgccgcatctgctgtaccgccgcaacgcgtgggacgcgctcgagcggcag
aacaaggaggctgacatgaccgcgctgcgcaggttcatcctccgcaagaagccgcacgtg
atcgtgatcggcggcgagtcccgcgaggcgctgactgtgaaggcggacgtgaccgaagtg
gtccagcagctggtcgaggacgagcagttcccgcggctgcccgtcgagatcgcggacaat
cacgtcagcaagatatatagcaacagtatccgcggacggaacgacttcagggagtatccg
gacattctgcgccaagccatttgccaggcgcgtttactccaagatcctctcatggaaata
tctcagctttgcggccacgacgaggaaatcctgtgcttccgataccacactcttcaagac
cagatagcgaaagaagatctattagaaggcattgaactagaattcgtcaacagagttaac
gaagtgggcgttgacgtcaacgaggccatattaacgggaagaggaacggaattactacag
ttcgtatgcggacttggaccaaggaaagcccaagcactaatcaaactcttcaaacagacc
aaccagaaactagaaaacagaacacaattggtaaccttctgccacatgggacctaaagtg
ttcatcaactgttcaggatttatcaaaatcgatacgagtagtttgggcgacagcacagaa
gcatacatagaggttctagacggttcccgagtgcatccggaaacctacgaatgggcgcga
aaaatggccgtcgacgcgttagaatacgaagacgaggacgcgaaccccgctggcgcttta
gaagaaatcctcgaagcgccagagaggctaaaagacttggatttggatgcttttgccgaa
gaattagagcggcaaggctttggaaacaagagtataacgctatacgatatacgagcagag
ttaaactcgagatacaaagaccttagggtgccttatcgctctcccacgcaggaagaactg
ttcgacatattgacgaaagagactcctgattcgttttatgttggcaaattggttttggcg
actgtggtgggcatctctcacaggaaaccgcagagagagatgttggatcaagccaaccca
gttaggaacgacgaaaccggcctttgggagtgcccgttctgtcataagaacgacttcccc
gagttgtcagaggtatggaatcacttcgacgccggagcgtgccccggacaagcgaccggc
gtccgcatccggctggacaacgatatctccggctacatccacataaagaacctctcggac
cgacacgttgccgatccgacggagcgcgtcaggatcggacagacggtgcactgtcggata
ctcaagatagacgttgaacggttctccgtcgattgttcgagcaaatcttccgatttgttg
gataagaacaaagaatggaggccaaataaagacccgtactacgaccaagaagcagaagac
aaggacgttcgaagagacaaggagagcaagcaaaccaaggaacgcatgcaatacgtaaaa
cgggtgattgtgcatccagccttccataatatttcgtttgccgaggctgagaaactaatg
gagaacatgggccaaggagaagtcattgtcaggccgagtagtaagggctccgaccacttg
acagtgacgtggaaggtcgcggacggcatctgtcagcacatcgacgtgcgggaggagggc
aaggaaaacgctttctctttaggtcgaagtctatggatccagggctccgagttcgaagat
ctagacgaaatcatcgcccgctacgtcacgccaatggccgggcacgcgcgagacctcatc
tcgtacaagtactacaaaccgctcggcggcatgcgtgataaagcggaggaaatactcaaa
gaagaaaaatccaaaaaccctaacaaaatccattacgtattctcagccgcgaaaaaccac
cccgggagattcctgctctcatacttaccccgcgcgcggtgcacgcacgaatacgtatca
gtaactcccgatggctacaaatttaggcaacgaatgttcgactccctaggcggtctactc
aaatggttcaaagaacatttcagagagccgccgccaagtggcacgccagtacaacgaacg
ccagcattacgcacgccacacggcatgtcgtctatgtaccacacgcctgccgcgcacact
ccggcgttccacacgcccgcgcacacgcccggcccggcttacatcaacactccatacacg
ccttccgcgcagactccgtacatgacgccgttcgccaccacaccgcgacaacccgacttc
ctgactcccgctgcgatgcctcggcacaaacccgttccagttccaatttataccgagccc
tcggactggcagaaagcagccgaggattgggtacggcatagaactgttcgggatacgccg
gcgacgcctaggagcagtgaaggcatgtccacaccacggcagtccaatcgcacgccgcgt
atggactcgcgcggcacaccgcggcacgacaggacgccgcacgaccgaacgccgcggcac
gacgcccgaagcacgccgcgctcgcactccggccgtcagtcccgcgcccagtccgtgcgc
tccacgcctcacaccaacacctcgcctcgctccatgtcgcttggagacgcgacgccgctc
tacgacgagaactaa
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integrated database retrieval system
