Choristoneura fumiferana (eastern spruce budworm): 141437686
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Entry
141437686 CDS
T11020
Symbol
Polr2A
Name
(RefSeq) RNA polymerase II subunit RpII215
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03020
RNA polymerase
cfum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
141437686 (Polr2A)
09124 Replication and repair
03420 Nucleotide excision repair
141437686 (Polr2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141437686 (Polr2A)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141437686 (Polr2A)
Enzymes [BR:
cfum01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
141437686 (Polr2A)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
141437686 (Polr2A)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
141437686 (Polr2A)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
141437686
NCBI-ProteinID:
XP_073957241
LinkDB
All DBs
Position
18:12843900..12853653
Genome browser
AA seq
1902 aa
AA seq
DB search
MATTNDSKAPLRQVKRVQFGIISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGV
IDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNP
KIKEVVMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEAKKGSGHGGCGHYQPS
IRRQGLDLSAEWKHVNEDSQEKKIIITAERVWEILKHITDEESFILGMDPKFARPDWMIV
TVLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLADNIRML
QFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPD
PNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPGAKYIVRDNGERIDLR
FHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTS
PYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTK
RDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMIRSHSTHP
DEEDDGPYKWISPGDTKVVVEHGELLMGILCKASLGASAGSLLHICMLELGHETAGRFYG
NIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPG
NTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQ
QNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDT
AVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVK
LSNKAFEKKFKFDPSNERYLKRIFNEEIIKELTESGYVIADLESEWEQLTKDREVLRQIF
PSGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLKKCVIVAGEDRLS
KQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGEIETRFQQAQVNPGEMVGAL
AAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARD
AEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPTKISPW
LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQ
DNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRIIITEQGEFK
AIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFY
GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVD
PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVGGGMYFGVGTPSMT
PLMTPWSTQNTPGYGSSVWSPGQVGSIMTPGGPSFSPSGASDASGLSPAYSAWSPQPGSP
GSPGPPLSPYASPAGASPSYSPTSPVYAAASPSLTPASPHYSPTSPSYSPTSPNYSPTSP
MYSPASPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPAYSPASPGYSPSSPSYSPTSPVYSPASPSYSPSSPNYTPTSPA
YSPTSPSYSPTSPAYSPTSPSYSPSSPKYSPTSPNYSPTSPSVGGGSPTYSPTSPQYSPT
SPQYSPASPAYSSSSPQHPGSTHYSPSSPNYSPSSPNYSPSSPGYSPSSTKYSPTSPTYT
ATSPNYSPSSPAYSPSSAGPTTYSPTSPNYSPTSPSYNEDDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggctaccacgaatgactcgaaggcgcctttgcgccaagtaaaaagagtacaattcggt
ataatttctccagatgaaatacgacgaatgtcagttacggagggaggcatccgcttcccc
gagacaatggaaggcggaaggcccaaattggggggtcttatggatcctcgacaaggggta
attgacagaagctccaggtgccagacctgtgcaggcaacatgactgaatgcccgggacat
tttggtcacatcgacttagctaaaccagtatttcacattggtttcataacaaaaactata
aaaatattaagatgtgtatgtttttattgttcaaaactgcttgtcagtccgacaaatcca
aagataaaagaagttgtaatgaagtcaaaggggcaaccccggaaaaggttgacttatgta
tatgacttatgtaaaggaaaaaatatttgtgagggaggagaagatatggatattggaaaa
gaaggtgaagaagccaagaagggctcgggtcatggaggatgtggtcactaccagccctct
ataagacgccagggattggacctctctgcggagtggaaacatgttaatgaagactcccag
gagaaaaagattataattactgcggaaagagtttgggaaattcttaagcacataacagat
gaagaatcattcattctgggcatggacccgaagttcgcaaggcccgattggatgatagtc
acagtgctacctgtgcctcctctgtcggtacgacctgctgtagtcatgtttggagcagca
aagaatcaagatgatttgactcacaaacttgccgatataatcaaagcaaacaatgaatta
atgagaaatgaacagtctggagctgctgctcacgttctggctgacaacattcgaatgcta
cagttccatgtagccacttttgtagacaatgatatgccaggaatgcctaaagccatgcaa
aaatcagggaaacctcttaaggctattaaagcaagattaaaaggaaaagaaggcagaatc
agaggaaacctcatgggaaaacgtgtcgatttctcagcacgtactgtcattacgcccgac
cccaacttacgtattgatcaagtaggagtacccagatctattgcacaaaatttgacattc
ccggaactagtaacaccattcaacattgatagaatgcaagagctggtgcggcgcggaaat
gcccaatatccgggtgctaaatatatagttcgtgataatggagagaggatagacttaaga
ttccatcctaaaccatcagatttgcatttacaatatggatacaaagtcgagcgacatctg
agagatgatgatttagttatattcaatcgtcagcccacactgcacaaaatgagtatgatg
ggccacagggtaaaggttttgccatggtctactttccgtatgaatttgagttgcacttca
ccatacaatgctgactttgacggtgatgaaatgaacttgcatgtgccccagtcaatggag
acacgtgcagaggtagaaaatatccatataacaccgcgacaaattattacaccacaagct
aacaaacccgtcatgggtattgtacaggatacactaactgctgtaagaaaaatgacgaag
cgagacgtgttcttaacaaaagagcaagttatgaacctgcttatgtttttacccacatgg
gatggtaagattccacagccgtgcattttgaaaccgcaacctttatggactggcaagcag
atattcacattgatcatacctggcaatgtaaacatgattcgcagtcactccactcaccct
gatgaagaagatgatggtccctacaaatggatttcacctggagatacaaaagtagtagta
gagcatggagagctccttatgggtatattgtgtaaagcgtctttgggtgcttcagcaggt
tccctgctgcatatctgtatgttggagttgggccatgaaactgctggtcgattttatggt
aatattcaaactgttatcaacaactggctgttgctagaaggacattccattggtattgga
gacaccattgctgatccgcaaacataccaagaaattcagcgtgccattgtcaaagccaaa
gatgatgtcatagaagttattcaaaaagctcacaatatggagttggagccgacacctggt
aatacactgagacaaacattcgaaaatcaagtaaatcgtattcttaacgacgctcgtgac
aagactggtggatctgccaagaagtcactgactgagtataacaacctaaaggctatggtg
gtgtcaggttctaaaggatcaaacatcaatatttcccaggttattgcttgtgtgggacaa
caaaacgttgagggtaaacgaattccgtttgggttccgtaaaagaactttgccacacttt
atcaaggatgattatggtcctgagtcaagaggctttgtagaaaattcatatcttgccggc
cttacaccctcagagttctattttcacgctatgggtggtcgcgaaggtctcattgatact
gctgtaaaaactgctgaaactggatacatccaacgtcgtcttataaaggctatggagtct
gtaatggtccattatgacggcactgttcgtaactcagttggtcaactcattcagttgaga
tatggtgaagatggtttagctggagaaactgtagagttccagaatctaccaacagtaaag
ctgtctaacaaggcctttgaaaagaaatttaaatttgacccctcaaacgaaagatatctt
aagagaattttcaatgaagaaatcataaaagagctcactgagtctggatatgtcattgct
gatctggaaagcgaatgggaacagttaaccaaggacagggaagtgttacgtcaaattttc
cccagtggcgaatcaaaggttgtattgccatgcaatttcaagaggatgatctggaatgta
caaaaaattttccacattaacaagcgaatgccaactgatctcagccccattaaggttatt
caaggcgtaaaggaccttctgaagaaatgtgtcattgtagctggcgaagatcgtctatct
aaacaagctaacgaaaacgcaacattgcttttccaatgcttagtaagatctacgctttgt
actaagtttgtttcggaggaatatagactgtctagtgaagcgttcgagtggttgattgga
gaaatcgagactcgattccagcaggcccaagtaaatcctggagagatggtgggggcgctg
gctgcgcaatctcttggagagcccgctacgcagatgacactgaatactttccactttgct
ggggtatcatccaaaaatgtaactctgggtgtaccacgtctgaaagaaattattaacatt
tctaagaaaccgaaagctccttctctaacagtgtttttaactggtggcgctgctcgagat
gctgagaaagctaaaaatgtactctgcagactggaacatacaacattgcgcaaagtaact
gcaaacacggcaatctactacgatcctgatcctcaaaatacagttattgccgaagatcaa
gaattcgtaaatgtctactacgaaatgccggacttcgatccaacaaaaatttcgccttgg
cttttacgtatcgagttagatcgtaagagaatgacagacaagaaactgactatggagcag
attgccgagaaaataaatgctggatttggagacgatctaaattgtattttcaatgacgac
aacgccgagaagcttgtgttgcgtataagaattatgaacaatgaagaaagcaaattccaa
gacaatgatgaagagacagtcgataaaatggaggatgatatgttcttgagatgtattgag
gctaatatgttgtcggacatgacgctccagggtattgaagctattgcaaaggtgtacatg
catttgcctcagacagaggcaaagaaacgtattattataaccgaacaaggagagttcaag
gccattgctgaatggttgttggaaactgacggtacttcactcatgaaagtattgtctgag
cgagatgtcgatccaatccgaacattcagtaacgacatctgcgaaatattccaggtattg
ggaattgaggctgtgcgtaaatctgtggaaaaagaaatgaacgctgtattgcagttctac
ggtctgtacgtaaactaccgacatcttgccttgctttgcgacgttatgacggctaaaggt
catcttatggccatcactcgtcatggcatcaacaggcaggacactggtgcgcttatgaga
tgttccttcgaagaaacggttgatgtgctattagatgccgccagccacgctgaagttgat
ccaatgagaggagtctcagaaaacattattatgggacaattgccaagaatgggcacaggt
tgctttgatttgctacttgatgccgagaaatgtaagcacggaatggaaatgggaggcctg
ggagtgggtatgggcgtcggcggaggcatgtacttcggtgttggaacaccatctatgaca
ccgctaatgacgccgtggtccacacaaaacactcctggatacggcagcagcgtctggtcc
cctggacaagttggaagcattatgacgcctggtgggccgtcattctcaccgtccggcgcc
tccgacgcttcaggcttgtcgccagcttacagtgcgtggtcgccgcagcctggctcccct
ggttctcccgggcccccgctatcgccttatgcatcacctgccggagcgtccccatcttac
tcccccactagccccgtctacgccgcggcatctccaagtctcactcccgcgtctcctcac
tactccccaacaagcccctcgtactcccctacttcaccaaattattccccgacctcgcct
atgtactccccagcttctccaagctattcgcccacgtctcctgggtactcgccgacctcg
ccctcttattcgcccacgtcgcccagttactccccgacttcaccgagttattcaccgaca
agcccagcgtactcgcccacttcaccaagctactcgccaacatcgcccagctactctcct
actagtccatcatattcaccaacgagtccgtcgtactctcctactagccctgcgtactcg
cctgcgtctccgggctactcaccttcatccccgagctattcgccaacaagtcccgtttac
agtcctgcgtcaccaagctattctccttcatcgccgaactacacgccaacttctcctgct
tattcccctacaagcccttcctactctccaacgtcgccggcatattcgccgacttcaccg
agttactcaccttcatcaccgaaatattcgccgacgtcacccaattactccccgacatcg
ccttcagtcggcggaggcagtcctacatattctccaactagccctcaatattccccgaca
agccctcaatattcgccagccagtccggcgtactcttcgtcgtcgcctcagcatccgggt
agcacgcactactcaccatcttctccgaattactccccgtcgtctccgaactactcgccg
tcttcgccgggctactctccgtcgtcgaccaaatactcaccgacgtcgccgacgtacacc
gcgacgtctcccaactactccccgtcgtcacccgcctactcaccttcttccgctggccca
accacctactcgccaacctcaccaaattactcgcccacttcaccatcttacaatgaagat
gacgattag
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