Choristoneura fumiferana (eastern spruce budworm): 141437868
Help
Entry
141437868 CDS
T11020
Name
(RefSeq) exosome complex component RRP42-like
KO
K12589
exosome complex component RRP42
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141437868
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141437868
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
141437868
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
141437868
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH_C
RNase_PH
T7SS_ESX1_EccB
Motif
Other DBs
NCBI-GeneID:
141437868
NCBI-ProteinID:
XP_073957523
LinkDB
All DBs
Position
18:complement(8421728..8423876)
Genome browser
AA seq
200 aa
AA seq
DB search
MQRAYHSSQAFDLKQLSILEGKQCWKLYIDILILESGGNLCDAVSLAVKGALFNTRIPLV
KAVLMDGGNVDLQLSDDPYDSKLLDVGSAPLLVTLCKIGEKCVVDPSAEEESCSAVSLIV
GVTGNPRHYSTEALDAVPEGGKCSTIAINGPGSVAQPTLKDAIKQGIIAAKSLDKALGHA
LLRERKENFGPKKQSYGFIK
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgagcttatcattcctcccaagcatttgatctcaaacaactttccattttagaa
ggaaaacaatgttggaaactctacattgatattctgattttagaaagtggtggtaacttg
tgtgacgccgtttctttagcagttaaaggtgcgctattcaatacaaggataccactggtg
aaagccgttttgatggacggagggaatgtagacttgcagctatctgatgatccatatgat
agcaaactgttggatgtaggatctgctccccttttggtgacattatgcaaaatcggcgag
aaatgcgtggttgacccatcggcagaggaagagagttgcagtgccgtatccctgatcgtc
ggggtgactggcaaccctcgccattactccacagaggcgctggatgcagtgcccgagggt
ggcaagtgcagcacaatcgcaataaatgggccgggaagcgtggcgcaacctactttgaag
gatgctatcaaacagggaataatcgctgctaaatctctggataaagccttgggccacgcc
ttattacgagagagaaaagaaaactttggcccgaagaagcaatcttatggatttatcaaa
taa
DBGET
integrated database retrieval system
