Choristoneura fumiferana (eastern spruce budworm): 141438137
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Entry
141438137 CDS
T11020
Symbol
TH1
Name
(RefSeq) negative elongation factor complex member TH1
KO
K15181
negative elongation factor C/D
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
141438137 (TH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141438137 (TH1)
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
NELF complex
141438137 (TH1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TH1
Motif
Other DBs
NCBI-GeneID:
141438137
NCBI-ProteinID:
XP_073957954
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All DBs
Position
18:11935135..11948945
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AA seq
575 aa
AA seq
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MPSQFEEERVWEGSNHNHFEEDAGEDVIENPEEVLQECLEKFKTPDYIMEPGIFGQLKRY
FQAGGNPEQVIEQLSINYNAVAQMANLLAEWLILGGVKVTEVQAMVENHLKDMILKTFDP
KKADTIFTEEGETPAWLTEMIEHPTWRSLIYRLAEEYPDCLMLNFTIKLISDAGFQGEIT
SISTAAQQIEVFSRVLKSAIVGFLQSSDDWQNSVNECAKMVCHGAHTYVYSQVIVHILSQ
EPRGGAIMKRLSQEITRCAQQSGHDVTPITLALTPGECWRGARAALAAMLSRGALNPADI
SVLFRAYTQPEPPPVHLLRIPQFLELLVDALFKLGSKLNPEHKSKYMYLLAYAASVCEGH
TPGRPVKDELKATVQAIEKVHAVCGSSASSSELIAELPTLYHCIRFPVVGMGVLVWVECV
VTEPSYFKLCTEHCPVHLALLDEVASCHQLLHHRLLRLLVQLFESPQDELEILVQLELKK
MLLDRMVNLLSRGCVVPVLRYVKQCWQRGDTDISLIRYFITEVLDAIAPPYTPEFVQLVL
PMVENEEITGTMRAEGENDPVSEFIVHCKAHYVVV
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgccaagccaatttgaagaggagcgcgtttgggagggatctaatcacaatcactttgag
gaagacgccggagaagatgttatcgaaaatccagaagaagtgttacaagaatgcctggag
aaatttaaaacacctgactacattatggagccgggcatatttggacaactgaaacgatat
ttccaagctggaggaaacccagagcaagtcattgagcaattatcaataaactacaatgca
gtcgcccaaatggcaaatttattagcagagtggctcatactgggaggtgtaaaggtgact
gaagtacaggcaatggttgaaaatcatttaaaagacatgatcctgaaaacatttgatcct
aagaaagcagatacaatatttacagaggaaggtgaaactccagcttggttaacagaaatg
atagagcaccccacctggagatcattaatatatagattagcagaagaatatcctgattgc
cttatgctgaactttactattaagttaatatctgacgctggttttcaaggagaaattacc
agcatatctacagccgcgcaacagatagaagtattctccagagtactcaagtcggctatt
gttggatttcttcaaagttctgatgattggcagaatagtgtaaatgagtgtgctaaaatg
gtttgccacggtgcacacacatatgtctacagccaagttattgtgcacatactgtcccag
gaaccccgagggggagccattatgaaaagactcagtcaagaaataactcgctgtgcacag
caaagcgggcacgacgtgacgccgatcacgctggcgctgacgccgggcgagtgctggcgc
ggcgcgcgcgcggcgctggccgccatgctgtcgcgcggcgcgctcaacccggcagacatc
tccgtactgttccgcgcctacacgcagcccgaaccgccgccggtgcacctcctcaggata
ccacagtttctagaacttctagtggatgccttatttaaactagggagcaaactaaatcct
gaacacaaatcaaaatacatgtacttactagcttatgctgctagtgtatgtgaaggtcac
actccaggaagacccgtcaaggatgagctcaaggcaacagtacaagccattgaaaaagtg
catgcagtctgtggtagctcggcaagttccagcgaactcatagctgaattacccaccttg
tatcattgcataaggtttccagttgtgggaatgggtgtactagtatgggtggagtgtgtt
gttacagaaccatcatacttcaaattgtgcactgaacactgccctgttcatttggcgctt
ttggatgaagttgcatcttgtcatcaattattgcaccatagactgctgagattactcgtc
caactgttcgaatcaccgcaggacgaattggaaatattagttcagcttgagttaaaaaag
atgcttttggatcgcatggtgaacttactaagccgcggttgcgtagtgcccgtactgcgc
tatgtcaagcagtgctggcagcgtggcgacactgacatctccttgatcagatactttatc
acagaggtattggacgcaatagcaccgccatataccccggaattcgttcaacttgtttta
cccatggttgaaaatgaagaaataacaggcacaatgcgagctgaaggcgaaaatgatcct
gtttctgaatttattgttcactgcaaggcacattatgttgtggtatag
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