Choristoneura fumiferana (eastern spruce budworm): 141438387
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Entry
141438387 CDS
T11020
Symbol
Mtr4
Name
(RefSeq) exosome RNA helicase Mtr4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
141438387 (Mtr4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141438387 (Mtr4)
03041 Spliceosome [BR:
cfum03041
]
141438387 (Mtr4)
03009 Ribosome biogenesis [BR:
cfum03009
]
141438387 (Mtr4)
03016 Transfer RNA biogenesis [BR:
cfum03016
]
141438387 (Mtr4)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141438387 (Mtr4)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
141438387 (Mtr4)
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
141438387 (Mtr4)
Complex C
U4/U6.U5 tri-SnRNP related factors
141438387 (Mtr4)
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
Pre-60S particles
Helicases
141438387 (Mtr4)
Transfer RNA biogenesis [BR:
cfum03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
141438387 (Mtr4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF4825
ATPase_2
Motif
Other DBs
NCBI-GeneID:
141438387
NCBI-ProteinID:
XP_073958349
LinkDB
All DBs
Position
18:16573543..16588365
Genome browser
AA seq
1028 aa
AA seq
DB search
MADIDSLFDCFEEPTKNEASAQYPNLKSEGNISETTAEKSVINNKRAHEEVEYADTSKKV
KVEEEDSDLTSDLNLDILDSRIRILTLETHEGCTHEVAIPPNHEYTSLRQPTAEPAKQYS
FILDPFQKEAILCIDNLESVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQ
KYREFSEEFHDVGLITGDVTINPAASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYM
RDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQ
HYLFPAGGEGIHLIVDETGRFKEDNFNTAMQVLSSAGDAGKGDQRGRRGGPQSGNNQTNI
FKIVKMIMERNFAPVIIFSFSKKDCEVYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEE
DRKLPQVENVLPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPAR
TVVFTNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVMLMIDQKVTPTVVKEMVQG
KADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKLKQKEYNA
VAIEQEDSIASYCNIRAQLDMLGSQFRGFITRPEYLKPFLQPGRLVKVKTEKYEYDWGII
VNFKHQTSKEKKGENPLTSEAVIIVDILLHVKKSSGDGETNVPCPDGEAGDVEVVPVLHT
LIHQISSLRVYYPKDLRPADSRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIDEPVFKDCV
ARIKLLEERLYAHPIHNDKNRGALTAAYERKQETYEELTQAKNELRKAKSILQMDELKKR
KRVLRRLGYCTATDVIELKGRIACELSSADELLLTELIFNGVFNTLTPPQCASLISCFVC
DENSSQASATGEELRGVLRQLQEYARRIAKVSMDAKMELDEDEYVGKFKCTLMDVVLTWA
KGASFLQICKMTDVFEGSIIRTMRRLEEVLRQLCQAAMNIGNTELEIKFSEAIKLLKRDI
VFAASLYM
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggctgatatagatagtttatttgattgcttcgaagaaccaactaaaaatgaagcctca
gcccaatacccgaatttaaagagcgaaggaaacatttcggagacgactgcagaaaaaagt
gttataaataacaagcgggctcatgaagaagtcgagtacgctgacacgtcaaaaaaagtc
aaagtagaggaagaagattcagacttgacttcggatttaaacttagacatattagactct
cgaattcgcatcctaacattagaaacccacgagggctgtactcatgaagtggctatacct
ccgaaccatgagtatacatcactcaggcaacccacagctgagcctgctaaacaatattct
ttcatattggatccctttcagaaagaagcaatcttatgcatagataatttggagtctgta
cttgtgtcggctcacacatcagcaggaaagacagtagtggcagagtatgcaatagcttta
tctttaaagaacaaacaaagggtaatctacacaacacctatcaaagccctctcaaatcaa
aagtatagagagttctctgaggagttccatgatgtaggtctcatcactggagacgtcacc
ataaatccagcagcatcatgccttattatgactactgagattctcagaaacatgttgtac
agaggatcagaaattatgcgggaagtaggttgggttgtgtttgatgaaatccattacatg
agggataaagaaagaggagttgtgtgggaagaaaccctgatcctcctgccagataatgtg
cactatgtgtttctgtcggccacaatcccgaacgcgcgacagttcgccgagtgggtgtgc
cgcctgcactcgcagccctgccatgtggtatacacagagtatcggcctacgccgctgcag
cactacttgttccctgccggcggggagggtatacatctgattgtcgacgaaacgggccgt
tttaaagaagacaacttcaacactgctatgcaagtgctaagtagcgcgggagacgccggc
aaaggtgaccagcgcggtcgccgcggtggcccgcaatcaggcaacaaccagactaacatc
tttaaaattgtcaagatgattatggaacgaaacttcgcgcccgtcatcattttcagcttc
agcaagaaggattgtgaggtgtatgctatgcaaatggcgaagttggatttcaatacaatt
gaagaaaagaagcttgttgacgaagtattcaacaacgctatggacgtgctctctgaagaa
gatcgcaagctgccgcaggtggagaacgtgttgccgttactaaggcgcggcatcgggatc
catcacggaggcctgctgcccatactgaaggaaaccattgaaatattgtttggtctggga
cttataaaagcgctgtttgcgacagaaaccttcgccatgggacttaacatgcccgcaaga
acagttgtgttcacaaactgtcagaaatttgatggaaaagactttagatttataacatct
ggcgagtatatccaaatgtccgggagagctggtcggcgagggttagacgacaagggcatt
gtcatgctgatgattgaccaaaaggtcaccccaacagtggtcaaggaaatggtgcaaggc
aaggcggatcctatcaactctgctttccatcttacttataacatggtcttgaacttgcta
agagtggaagaaattaatccagaatatatgttagaaaggagtttcttccagtttcaaaat
caagctgctataccggatctgattgacaaggtgaaactgaaacagaaagagtacaatgca
gtagcgatagagcaagaggactcgatcgcctcgtattgcaatatcagggcacagttggac
atgctggggtcgcagttcagagggttcatcacgcggccagaatatttgaagcccttctta
caaccaggacggcttgtcaaggtgaaaacagaaaaatacgagtacgattggggcatcata
gtaaactttaaacaccagactagcaaagaaaagaagggtgaaaaccctcttacatctgag
gctgtcattattgtggacatattgttgcatgtgaagaaatctagcggggatggtgagacc
aatgtgccgtgtccagatggtgaggcgggagatgtagaagttgtcccagtgctccacacc
ttaattcaccagatcagctctctccgggtgtactaccccaaggatttgcgacctgccgat
agtcggaaatcggtactcaaaactataggggaagtgaagaaacgtttccccgaaggccca
cctctcctgaaccctattaaagatatgaagattgatgaaccagtgtttaaggattgcgtg
gcgagaatcaagctgttggaagagaggctatacgctcatccaatacacaatgacaagaat
cgtggcgcgctcacagcagcttacgaaagaaaacaagaaacatatgaagaactaacccaa
gctaaaaacgaactaagaaaagctaagagcatattgcaaatggatgaactgaagaaacga
aaacgagtgctcagaagacttgggtactgtactgccactgatgttatagagctgaagggc
cggatagcttgtgaactcagcagtgccgatgagctgctcctcacggagttgatattcaac
ggcgtgttcaacacgctgacgccgccgcagtgcgcgtcgctcatcagctgtttcgtgtgc
gacgagaacagctcgcaggcgtctgccactggtgaagagttacgaggcgtcttgaggcag
ctgcaggagtacgcgcgcaggatagcgaaggtatcaatggacgcgaagatggagctggac
gaggacgagtacgtgggcaagttcaagtgcacgctcatggacgtcgtgctcacctgggcc
aagggcgccagcttcctgcagatctgcaagatgacagacgtcttcgaaggctccataatc
agaactatgcgccggttggaagaggtcctcagacagctttgccaagcagccatgaacatc
ggcaacactgagttggagatcaaattcagcgaagccatcaagctactcaagagagacata
gttttcgccgccagtttgtatatgtaa
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