Choristoneura fumiferana (eastern spruce budworm): 141438414
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Entry
141438414 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 1-like
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141438414
03036 Chromosome and associated proteins [BR:
cfum03036
]
141438414
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
141438414
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
141438414
SLIK complex
141438414
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
ResIII
DEAD
TPR_CFAP46_N
Motif
Other DBs
NCBI-GeneID:
141438414
NCBI-ProteinID:
XP_073958381
LinkDB
All DBs
Position
18:13881596..13900142
Genome browser
AA seq
1808 aa
AA seq
DB search
MHLNGSMTESGSESASEKGNKSNSSGSGSGSESDSGSSSSGSGSGARSGSEKSSAADGHH
SDYSKSSPKHSNANSSKSDHHTDKDSSDDFHSKSKSSNHEKVNSDLWEDNPDIYGIRRSA
RSRKEPDRLKIADSDSSEKGRSHNRKSRKKSDSWNSDSSESDSDMKGSPPPPSKRPGQRS
VPLRKKKPARRRRLSSEDDESTEGSDEESRNRAATRRTGAAAVSYKEASDEQTDSSDLLE
VEAGDGEVEAEPEVEDHSETIERVLGHRRGKKGVTGNVTTIYYIEENGDPNEGCDPIDED
STEPQYLIKWKGWSHIHNTYESEKSLAEQKVKGLKKLENYIKKETDLSWWRQQAGPEDID
YYECQAELQQELVKTYNNVERIIAVQTRELEGGGTAHEYFCKWESLPYCDATWEDSALIE
RKWPVQVEQFKTREAANTTPSRHCPVLRRRPKFHQVKEQPEYMGSDQSYVLRDYQMDGLN
WLIHSWCKENSVILADEMGLGKTIQTICFLYYLFKSQQLYGPFLCVVPLSTMTAWQREFQ
QWAPDINVVTYIGDVVSRDIIRQFEWSFHPSKRLKFNAILTTYEILLKDRQFLRSFGWAC
LLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNSLKELWALLHFIMPNKFETWED
FEKDHEDAATKGYEKLHKQLEPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWIL
TKNYSALRKGVKGSINTFINIVIELKKCCNHALLTKPEDFESRASLATTDAVEKLLRGSG
KLLLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGEIRKQALD
HFNAEGSSDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVN
IYRLVTARSVEEDIVERAKRKMVLDHLVIQRMDTTGRTVLNKRDSSGTTANNPFNKEDLN
AILKFGAEELFKDDDENDEEPVCDIDEILQRAETRDEGPAMVGDELLSAFKVASFAFDEE
KAVMEVKKETAEEDTKDWDDIIPENVRKTIADEEKNKEMEDLYLPPRRKNLQSNSAESRR
NRKRGGRGSTEGGEGDGEGEADDSYASEGDASADDDRPRKXRPPACFHREKIKGFTDQEI
RRFVKSYKKFSAPLKHLDSIACDAELQEKPLAELKKLGEILQERCKAVLNDTSEPTNEHS
DGRKNARKTFKLGGVPVNAKTMAACQDELAPLDGFLPDTKEERLKWQLDFRTRPANFDIE
WTVADDSKLLAGIYQYGMGSWEAIKMDSSFEIGEKILTNEDKKPQAKHLQSRSEYLLKLI
KKLLDQKNGKQKQRKPRMKKGKEPVTKDIVEDDMSSGDEKKGNKAKNDKLDKNNKHKAEE
VSHDEANDKKDNKNKKRSKKDSKERVKGGKAKGRKKPAGPMHFTANHEPRALEVLGDLDP
AVFEECKEKMRPVKKALRALDNPDQTLSESEQVTRTRTCLTQIGSQIDICLEEYPDTEKK
VEWRSNLWYFVSKFTNFDAKQLFKLYKYGLKKTDTPGKQKKETKHKENVKVKNNHNSNNH
VKNNKEKKIDENNVKKEKRPKLEKEKSDKANDKVPHSSGVKRKLEEGECDPEPTENKRHD
RHKHRHSSKDRSLKRDDLTYRERSRSERERDRDRERDRDRDRERDRDRDRDRERSRTRRD
SGGAGTPRVRPAYPPAHPHPDHATHPAHPAHRAPAHPGWTPPAYPGPRQYRGDRNPRPHD
KRRYGYGAMAGGYSGYYEGTAMAGGMGFPAARGYPEDWRPYSQPDYYEERDYEREVYRRD
YDRRAPPT
NT seq
5427 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgaatggttcaatgactgaatcaggcagtgaatcagcaagtgaaaaaggcaat
aagagtaactccagtggctctggttcaggaagtgaaagtgacagtggatcaagttcatca
ggatcaggatctggggcaaggtcagggtctgagaaatcttctgcagcagatggacaccac
agtgattactccaagtcttcacctaagcacagtaatgcaaattcctcaaaatctgaccat
cacaccgataaagattcctcagatgacttccattccaaatctaaatcgagtaatcatgag
aaggttaattctgatctttgggaagataatccagacatctatggtattagaagatcagct
cgatctcggaaggaaccagatagacttaaaatagcagatagtgattcaagtgaaaaagga
agaagtcacaatagaaagagtaggaaaaaaagcgactcatggaattcagattcatctgag
agtgatagcgacatgaaaggctcccctcccccaccttctaaacgaccaggccaaagaagt
gtacctctcagaaaaaagaaaccagcgagaagaagaagattatcaagtgaagatgatgaa
agcacagaaggatctgatgaagaatcaagaaatcgggcagcaacacgtcgcactggtgca
gcagcagttagttataaggaagcaagtgatgaacaaacggactcttcagatcttctagag
gtagaagcaggtgatggtgaagttgaggctgaaccagaagtagaggaccacagtgagaca
attgaaagagttctaggtcacagacgagggaagaaaggagtcactgggaatgtgacaacc
atttactatatcgaagagaatggggatcccaatgagggttgtgatcccattgatgaagat
tcaactgaaccgcagtacctgatcaaatggaaggggtggtctcatatacataacacatat
gagtcagaaaaatcacttgctgaacaaaaagtaaaaggccttaaaaaattagaaaactat
attaaaaaagaaactgacttatcttggtggagacaacaagcgggacctgaagacatagac
tactatgaatgtcaagcagaattacaacaagaattagtgaaaacatacaacaatgttgaa
agaattatagctgtgcagactcgagaactggaaggtggcggaactgctcatgaatatttt
tgtaaatgggaatcacttccttactgtgatgcaacttgggaggattctgctttaatagag
agaaagtggccagtccaggtagaacagttcaagacccgggaagctgctaacacaactcct
tccagacattgccccgttttgagacgaaggccaaagtttcaccaagtcaaagagcagcca
gaatacatgggctctgatcagtcatatgtattacgagattatcaaatggatggattaaat
tggctgatacattcctggtgcaaagaaaactcagttattttagctgatgagatggggtta
ggcaaaactattcagacaatatgttttctgtattacttgtttaaatctcaacaactttac
ggaccattcctgtgtgtcgtaccgcttagtaccatgactgcatggcagagggagtttcaa
cagtgggcgcctgatattaatgttgtcacttacataggtgacgtagtcagcagagacatt
atcaggcagttcgaatggagttttcatccctccaagaggctaaaatttaatgccattctt
accacctatgaaatattgctgaaagacaggcagtttttaagatctttcgggtgggcatgc
ttgttagtagacgaggctcacagattgaaaaatgacgactccttgttgtacaaggctttg
aaagaatttgacacaaatcacaggttactggtaactggtacccccttgcaaaattctctg
aaagagctgtgggcccttctgcattttattatgcctaacaaatttgagacatgggaagac
tttgaaaaagaccacgaagatgccgcgaccaagggctatgaaaagttacacaagcaatta
gaacctttcatattaaggaggcaaaagaaagacgtagagaaatcgttgcctgctaaagta
gagcagatattaagagtagaaatgacttccattcaaaagcaatactataaatggatccta
acaaagaattacagtgctttgcgcaaaggtgtgaagggttcgataaatacgttcataaat
attgttatagaactgaaaaagtgttgcaaccatgcgcttctgacaaaacctgaagatttc
gaatctagagcatcacttgccactacggatgccgttgagaaacttttaagaggatccggg
aaactacttctcctggataaattgctatgcagattgaaagaaactggtcacagagtgctt
atcttttcacaaatggtgcgaatgctggacatcttggctgaatatttgcaaaggaggcat
tttcccttccaacgccttgatggcagcataaaaggggaaataaggaaacaggctctggac
cattttaatgcagaaggttcatcagatttctgtttccttctttcaacaagggctggagga
ttaggtattaatttggctacagctgatactgtgataatttttgattctgactggaatcct
caaaatgatctgcaagctcaagctcgcgcacatcgcattgggcagaaaaatcaggtaaac
atttatcgattagtaaccgcacgatctgtggaagaggacattgttgaacgtgcaaaacga
aagatggtattagaccacctcgtcatccagagaatggacaccactggtaggaccgtgctc
aacaaacgcgattcctctggcacgacggcgaataatccgtttaataaggaggatttgaat
gccattttgaaatttggtgctgaagagttgttcaaagatgatgacgaaaatgacgaggag
cctgtctgtgatattgatgagattttgcaacgtgctgaaacccgtgacgaaggaccggct
atggtcggcgatgaacttttatctgcattcaaagtcgctagctttgcttttgatgaagaa
aaagcggttatggaagtaaaaaaagaaaccgcagaggaggataccaaagattgggatgat
ataattccagagaacgtgcgtaaaactattgctgatgaggaaaagaacaaagaaatggaa
gacctgtacttgccaccgagaagaaagaatttacaaagcaatagtgctgaaagcagacgg
aatcgcaagcgtggcggacggggttcgactgaaggtggagagggcgatggcgaaggtgaa
gcggatgacagctacgcgtctgaaggcgacgccagcgcggacgacgatcggccgcggaaa
nngaggccgcccgcctgcttccaccgggaaaagatcaaaggattcactgaccaagaaata
cgaagattcgttaaaagttataaaaagttttcggcgcctctgaaacatcttgatagtata
gcgtgtgatgcggaactacaagagaaaccattagctgaattaaagaaactaggagagata
cttcaggagaggtgtaaagcggttttgaatgacacatctgaaccgacaaatgaacatagc
gatggacgtaaaaacgccagaaaaactttcaaacttggaggagtacctgttaatgcgaag
acaatggcagcttgccaagatgagcttgccccattagacggattcttgccagacacaaaa
gaagaaaggttaaaatggcaattagattttaggacaaggccagctaatttcgatatcgag
tggactgtggcggatgattctaaactacttgcgggaatttatcagtacgggatgggatcg
tgggaagctattaaaatggactcttctttcgaaatcggagaaaagattctgacaaatgaa
gacaagaagccgcaagccaaacatttacagtcgcgatctgaatatttactaaaactcatc
aaaaagcttcttgatcagaaaaatggcaagcaaaaacagagaaaaccgcgaatgaaaaag
ggcaaagaaccggttactaaagatatagtggaggatgatatgagttctggagatgagaag
aaaggaaataaagcaaagaatgataaattagacaagaacaataaacataaggcggaagaa
gtatcacatgatgaggctaatgataaaaaggataataaaaacaagaaacgatcaaagaaa
gatagtaaagagcgggtgaaaggaggcaaagcaaaaggacgtaagaagccagcgggacca
atgcatttcacagcgaaccacgagccgcgggcattggaagtgctaggcgatcttgatcct
gcagtgtttgaagagtgcaaagagaagatgagaccagtaaaaaaagctttgagagcatta
gacaatcctgaccaaacattgtcagaatccgaacaagtgactaggacacggacatgcctt
actcaaataggaagtcaaatagacatatgcctagaagaatatccagatactgaaaagaag
gttgaatggagaagtaatctctggtactttgtatcaaaatttacaaattttgatgcaaag
caattgtttaagttgtataaatatggtctcaagaaaacagatactcccggcaaacaaaag
aaagaaactaagcacaaagaaaatgtgaaggtaaaaaataatcataactcaaataatcac
gtaaagaacaataaagagaaaaagattgatgaaaataatgtgaagaaggaaaagaggcct
aagttagagaaggaaaaatcggataaagcaaacgacaaagtacctcactcatccggcgta
aaaagaaagttggaagaaggtgaatgtgatcctgagcccaccgaaaataaacgtcatgac
agacataaacacaggcactcgagcaaggataggagcctgaagcgcgatgatttgacctac
agagagcgtagtcggtcggagcgagagcgagacagggaccgggaacgggatcgcgaccga
gaccgagagagggatcgggatcgagaccgcgaccgggagcggtcgcggacgcggcgggac
agcggcggcgcgggcacgccgcgcgtgcggccggcctacccgccggcgcatccgcacccc
gaccacgccacgcaccccgcgcaccctgcgcaccgtgcacccgcgcatcccggctggacg
ccgcccgcctaccccggcccgcggcagtaccgcggcgaccggaacccgcgaccacatgat
aagaggaggtacggatacggcgcaatggcgggcggctacagcgggtactacgagggtacg
gccatggctggcggcatggggttcccggcggcgcgcggctaccccgaggactggcggccg
tactctcagcctgattattatgaggagcgcgactacgaacgagaagtttatcgtcgcgac
tatgaccgccgcgccccacctacttaa
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