Choristoneura fumiferana (eastern spruce budworm): 141438918
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Entry
141438918 CDS
T11020
Symbol
Msh6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
141438918 (Msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141438918 (Msh6)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
141438918 (Msh6)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
141438918
NCBI-ProteinID:
XP_073959083
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Position
20:complement(7294355..7312135)
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AA seq
1119 aa
AA seq
DB search
MSKRNSVGPSNTLFNYFTKTPPASKKPKPDTNGDGSPLNSSAKKEIESIIESKKRERQVT
PSPEVKKECSDDEEPIKPKKRKRIRLNPLDSDDSDTENKADNIIETPKEKTSSEKKLNDS
FKYEAKTTKDKTSGVKGPSKPVASAKPAESQNQLPISDDGNWTHCKLNWLRPDKIRDAMK
RKPDHPDYDPRTLYVPPEFLKSQTPAHRQWWEMKTTNYDCVLFFKVGKFYELYHMDAAVG
VNELGFSYMKGEFAHSGFPESAYARMASTLVSKGYKVARVEQTETPDMMQERCKKLGQTS
KSDKVVRREICQVTLRGTQTCGLQDPGPSEAQAAYLLSVAEEESNGCSTYGVCFVDTSIG
LFHLGQFKDDKHSSRLLTTLAHFPPALIVYDRKSTTPRTSKLIATHCHHARREPQTAWSP
EKTLKTLAENYYRTNADGDWPEGLKPFLHEGDALGLTPAANCYLAIKALGGCVSYLTQCL
LDIQILGMSQFTSYSPPDVLNKTLSQEERESKWEGGCTMVLDAITLRNLRIVQDEGCLYD
KLNFCATAVGKRMLYQWVCAPSCNLRVITERQEAVKELFENQELSQDAKNILTTLPDLER
LLAKVHALGNLKKSTSHPDSRAIFYEEQKYSKRKVLDFIAVLNGFNAALKLVELFGDVES
KLLKKLTRFSPVGMFPDYRDTLKFFKEGFNQSEAEKEGRIVPGAGVDQEYDATLKLIEDI
EDELKEYLQEQEKYFKCRLKYVGTDKKRYQLEVPESATKRATSDYHLEGARKGYKRFSTS
ETKDLLARMTAAEEQKRHVLKDLSRRMFEKFSSKHSLWEGATMCVAVLDILLALAEFARQ
QSGDVCLPSVTVEDVPYINIVDGRHPCIPIVADFIPNDARLGGGSAALLLLTGPNMGGKS
TLMRQVGLLTVLAHLGSYVPAAECSLSLVDRVFTRLGAADDILAGQSTFLVEMNETAAIV
RHASLHSLVLLDELGRGTSTYDGTAIASGVCVELAHRGCRVVFSTHYHSLVHHLASHPGV
VLGHMACMVETDESTADSDDQIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRA
HEISKKLEKEATCVRAFRDILKMEDNGTQLRELLAALSI
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacgcaacagtgtaggtccttccaatactctctttaattacttcactaaaaca
ccgccagctagcaagaagccgaaacccgatacgaatggcgatggaagtccactcaattca
tcagcaaaaaaagaaatagaaagtataattgagagtaaaaaacgtgagaggcaagttact
ccgtctccagaagtgaagaaagaatgcagtgatgatgaggaacctatcaaacctaagaaa
aggaagaggatcagactcaaccccctggattctgatgactctgatacagaaaataaagca
gataatatcatcgagacaccaaaggagaaaacgtcatcggagaagaaactcaatgacagc
ttcaagtatgaagcaaaaactacaaaagataaaacttctggtgtcaaggggccatcaaag
ccagttgcatcagcaaagcctgcagaatctcaaaaccaactccctatctctgacgatggc
aactggacgcactgcaaattgaactggctacgcccagacaagatcagagacgccatgaag
aggaagcctgatcaccctgattacgatcccagaacactttatgtgccaccagagttcctg
aagtctcaaactccggcccatcggcaatggtgggaaatgaaaacgacaaattacgactgc
gtgctcttcttcaaagtcggcaagttctacgaactgtaccacatggacgcggcagtcggg
gttaatgaactcggattctcttatatgaagggcgagtttgctcactctggttttcctgaa
agcgcgtatgcaagaatggcctctacgttggtgtccaaagggtacaaagtcgcgcgtgtc
gagcaaacggaaacgcctgacatgatgcaggagaggtgtaagaaactgggtcaaacatcc
aagtccgacaaagtggtgcggcgagagatatgccaagtgacactccgtgggacccagact
tgcggcttacaggacccggggcccagcgaggcccaagccgcctatttactgtccgtggca
gaagaggagagcaacggatgcagcacttacggcgtatgcttcgtggacacctccataggc
ttgttccacctcgggcaattcaaagacgacaagcattcgtcccggctgcttaccactttg
gcgcatttccctccggcattgatcgtgtacgaccgtaagtcaacgaccccgcgtacatcg
aaactgatcgcgacacactgtcaccacgcgcgtcgcgagccgcagaccgcatggtcgcca
gaaaagacgctcaaaacacttgccgagaattattacaggaccaacgcggacggggactgg
ccggaggggcttaagccgttcttgcatgaaggtgatgctctaggtctgacaccagcagct
aactgctacctagcaatcaaagcgctcggcggatgcgtgtcgtacctaactcagtgtctc
ctcgacatacaaatactgggaatgtcccagttcacttcttactccccgcccgatgttcta
aacaaaacgctgtctcaagaagaaagggaaagtaaatgggaggggggatgtacaatggtc
ctggatgctataacgctgaggaatctgaggatagtgcaggatgagggctgcttgtatgac
aagttgaatttctgcgctaccgctgttggcaaaagaatgttataccaatgggtgtgcgct
ccgagctgcaacttaagagttataacggagagacaagaagcagtcaaagagttgttcgag
aaccaagaactgagccaagatgcaaagaacatcctaactaccttgccagatttggaaaga
ctgttggccaaggtacacgcacttggcaatctgaagaagtccacctcacacccggactct
cgagcaatattctacgaagagcaaaagtattccaaaaggaaagtgctcgattttattgca
gtgctcaacgggttcaatgccgcgctcaaactggttgagctgttcggtgacgtggagtcc
aagctgctcaagaaactgacaaggttcagtcctgttggaatgttccctgattatagagac
actttaaagtttttcaaggagggtttcaaccaatcagaagccgagaaagaaggtcgcatc
gtgcccggcgcgggtgtagaccaggagtacgacgccactctgaaactcatagaggacatt
gaggacgaactgaaggagtacttgcaggaacaggagaaatacttcaagtgtcgattgaaa
tatgtgggtacagataagaagcgatatcaacttgaagtgccggagagcgcaacgaagaga
gctacctccgattatcatttggaaggcgcgcgaaagggatacaagaggttctctacctct
gaaactaaggacctcctagcccgcatgacggcagcagaagaacaaaagcgacatgttctc
aaagacctgagccggcgaatgttcgagaagttttcgagcaaacattcgctgtgggaagga
gcgactatgtgcgtggctgtactcgatatattactcgctttggcggagttcgcgagacag
cagagtggggatgtgtgtctaccaagcgtcactgtagaagatgtgccctacataaacata
gtggacggccggcacccttgcatcccgatcgtggccgatttcattccgaacgacgctcgg
ctgggcggcgggtcggcagcgttgcttctgctgactggccccaacatgggcggcaagtct
accctgatgcgacaagtggggctgctgactgtactggcgcacttgggttcgtacgtacca
gcagccgaatgttccctgagcctagtggaccgcgtgttcactcgcctcggtgccgccgac
gacatcttggctggacaatcgacgttcctcgtggaaatgaatgagacggcagctatcgtt
cgccacgccagtctgcactcgctcgtgctgctcgatgaactagggcgcggtacctcgact
tatgacggcacggcgatagcatcaggcgtatgcgtggagctagcgcaccgcggttgccgc
gtcgtgttctctactcattatcactcgctcgtacaccatttggcttcgcatcctggagtt
gtgctagggcatatggcgtgtatggtagaaacagacgaatcaacagccgacagcgacgat
caaatcccagaagaaaccatcacgttcctctacaaattgtcacctggagcttgtcccaaa
tcgtacggcttcaacgctgctcgtctcgcaggtattcccaaagagatcaccaggcgagct
cacgagatatcgaaaaagctagagaaggaggcaacatgcgtccgcgcctttagggacatt
ttgaaaatggaagacaatgggacgcaattacgagagttgctggcagctttgagcatttaa
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