Choristoneura fumiferana (eastern spruce budworm): 141439224
Help
Entry
141439224 CDS
T11020
Symbol
trh
Name
(RefSeq) PAS domain-containing protein trachealess isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cfum03000
]
141439224 (trh)
Transcription factors [BR:
cfum03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
141439224 (trh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS_11
PAS
PAS_9
HLH
PAS_4
Motif
Other DBs
NCBI-GeneID:
141439224
NCBI-ProteinID:
XP_073959517
LinkDB
All DBs
Position
20:11519503..11790175
Genome browser
AA seq
864 aa
AA seq
DB search
MEHPGGFASSPWAAMLGHGMHGMMQHEYSHAHHAPMPMDLHVPQPFPYYRYRDDALCWSD
RKPPVDGVGNAASVNSRYYPQENCILELRKEKSRDAARSRRGKENYEFYELAKMLPLPAA
ITSQLDKASIIRLTISYLKLRDFSGHGDPPWSRDPLPTSKTLKGAQNRRSAVGLAMELFE
QHQGTHILQSLDGFALSVAADGRFLYISETVSIYLGLSQVEMTGSSIFDYIHQADHAEIA
EQLGLSLAGRSGAGLNSPASGSEEGSQHGTNNPDVSAIMSLAASGGLYRGMDRAFCIRMK
STLTKRGCHFKSSGYRVVLLLCRLRPQYTFSHSRKSPPALLGMVALAIALPPPSVHEIRL
ESDMFVTRINFDFTVAHCEPSRVNELLGYTAEEMTGKNLYALCHGEDANKLRKCHVDLIN
KGQVLTHYYRVMNKLGGYTWMQTCATVVCSSKNAEEQNIICVNYVISGREYPNTVMDCCQ
MEESVQGVKREETTGDPENGPPDADNSGNPPPPSRHPAERTEASNNAESASTAPGPTSDV
THLTRLSDSQPLPLHTNPERTSPMPARRMKKRKHTDCDDDERDEDRRKSSSNPGAAISPA
ERDMNKTNLSIPEGSTDATSVRDLENAMSKHLPALDGKEISHRPTDFSTDALLKQQQQKS
TIQWIGTQNHHINHLNRQIPGNHTSTPASALLRQLYANRESVIRSNFLGDGRTGGYYSSD
GQSGPLPTPPGSEGSGYGEQLGHKGTDIGSLAYGGYADYHSAMTPPGSVSPRDKQQYALS
YDNSAYSEALRHSYLGEAPLPLKPQAYSAVPGALDYTSTLDQSQFFHPPSSFHLYHPQAH
SAHAHAHQPDKSAPPNTNWYSSGS
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggagcatccgggagggtttgcgtcatcgccatgggccgccatgttgggccacgggatg
catggcatgatgcagcatgagtatagtcatgcgcaccacgcgcccatgcccatggatcta
catgtgccacagccgttcccttactaccgatatcgggacgatgctctttgctggtcggac
aggaaaccaccggtagatggcgttggtaacgctgcttcagtcaatagtcgatactatcca
caagaaaactgcatcctcgaattacggaaagagaaaagccgggacgcggcgagatctcgc
cgcgggaaagagaactacgagttttacgagttggcgaagatgctgccgcttccagctgcc
atcaccagccagttggataaggcgtccatcatccggctgaccatcagctacctgaaactt
agggacttctctggccacggcgatcccccatggagccgggatcctctgcctaccagtaaa
actttaaaaggagcccagaaccgaagatcagcggtcgggctcgccatggaactgttcgag
cagcaccaaggcacacatatactccagtccctagacggcttcgcgctgtcggtagcggcc
gatgggaggttcctgtacatatctgaaactgtttctatatatttaggattatcacaagta
gaaatgacgggcagcagtatattcgactacatccaccaagctgatcacgctgagatcgca
gagcagctggggttgtccctcgcgggtcggtcgggggctggactgaacagccctgcgtca
ggcagcgaagagggcagccagcacggaactaacaaccctgatgtgtcggcgataatgagt
ttagcagccagtggtggactctaccgaggaatggaccgagctttctgcatacggatgaag
agcaccctcacaaaacgaggatgccacttcaagtcctcaggatatcgggtagtcctcctc
ctctgccgtctccgcccacagtacacattctcccacagcaggaagtcaccgccagcactg
ctagggatggtggcattagccatcgcgctaccaccaccgtcagtccatgagatcagactg
gagtctgatatgttcgtgaccaggatcaactttgacttcaccgtcgcgcactgcgagccc
agcagagtaaacgagctgctgggatacacggcagaggagatgaccggaaagaatctgtat
gcactctgtcacggcgaggacgctaacaagctgaggaaatgccatgtagatttaataaac
aagggccaagtgttaacacactattaccgggtgatgaacaagctcggcggctacacctgg
atgcagacctgcgctactgtcgtatgctcctcgaagaacgctgaagaacagaacatcatt
tgtgtgaattatgtcatcagcggacgcgaataccctaacactgtcatggactgctgccaa
atggaggaaagcgtgcagggcgtgaaaagagaagagactacgggagaccccgagaacggc
ccaccagacgctgacaactctggcaaccccccgcccccttccaggcaccccgctgagaga
accgaagcctccaataatgcggaatcagcttcaacagcccctggaccaacttcggacgtc
acgcacctcactagactcagcgactcccaaccgttaccactccacactaacccagagaga
acgtcccccatgccagccagaagaatgaaaaagagaaaacatacggactgcgacgatgat
gaaagagacgaggatagacggaagagttcatcgaaccctggcgcagcgatatccccagcc
gaaagagacatgaacaaaacaaacttatctatccctgagggatctacagacgcgacttct
gttagagacctagaaaacgccatgtcgaagcatctaccagctttagatggcaaggaaatt
tcccacaggccgactgacttttccacggacgcgttgctaaaacagcagcaacagaaatcc
acgatacagtggataggaacacaaaaccaccacataaaccatctgaacagacagattcct
ggtaaccatacttcgacgccggcgtctgctttgctaaggcaattatacgctaatagagaa
agtgtaattcgaagcaatttcttaggagacggtagaactggggggtattactcaagtgat
ggtcagtcgggaccgttgcctactcctccgggaagcgaaggttcaggttatggtgaacag
ctaggtcataaaggtacggacattgggtcgcttgcttatggagggtacgcggactaccat
tcagcgatgacccctcctggctctgtttctcctagagacaagcagcagtacgctttgtcc
tatgacaacagtgcttactccgaggcattgagacactcgtatttaggtgaagcgccgcta
cctttaaaacctcaggcgtattcagcggtccccggcgcgttagattatacatcgactctg
gatcagtcccagttcttccatcctccttcctctttccatctgtaccatccgcaagcccac
tctgcccatgcccacgcccaccaaccggacaaatcagccccccctaacacgaattggtac
tcgtccggttcgtag
DBGET
integrated database retrieval system
