Choristoneura fumiferana (eastern spruce budworm): 141439495
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Entry
141439495 CDS
T11020
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03013
Nucleocytoplasmic transport
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
141439495
03015 mRNA surveillance pathway
141439495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141439495
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
141439495
5.6.2.5 RNA 5'-3' helicase
141439495
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
141439495
mRNA cycle factors
Common to processing body (P body) and stress granule
141439495
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
141439495
NCBI-ProteinID:
XP_073959874
LinkDB
All DBs
Position
21:9445625..9456097
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AA seq
1038 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLSTSNQ
VNGLGRLDLSAKVSSVTNAIAELQFEEEDEALYSSKELPDHACKYCGIHDPSTVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAQNPGSHFMSTSMFDAREAMVPGSVYDRARPLRDPLAYVGPERAALLHAPVPHAAFQA
HRGLLRPAPPQAARARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGL
LSQDSTYQGGFRARCSQY
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcttatggaccgagctctcaaacgctcacatttctggatactgaagaa
gcagatctcattggggctgacactcaaggctcggagttcgagtttacggacttcactctt
ccgtctcaaagccagacgcaggcgtcgcagcacgaccatggtctgtccacgtccaaccag
gtgaatggcctcggccgtttagatctgagtgcgaaggtttcctctgtgaccaacgctata
gctgagttacagtttgaagaggaagatgaggctttgtatagcagcaaggaattgcctgac
catgcctgcaagtattgtggaatccacgacccttccactgttgttatgtgcaacatatgc
aataaatggttttgcaatggacgtggtaacacctctggttcccacattatcaaccacttg
gtccgagccaagcacaaggaagcagccctgcaccgtgacggacctcttggtgagaccctg
ctggagtgctactcctgtggggctcgcaatgtctttgttctcgggtttattcctgcaaag
gctgactcggttgtggtgttgttgtgtcgccaaccatgtgctgcacaaagttctttaaag
gacatgaactgggaccaagagcagtggaagccattgatttcggatcgcgcgtttttatcg
tggctggtaaaagtgccatcggaagcagagcaaatgagagctcgtcaagtgacccctcag
caaattggtcgcctggaagagttgtggcgtgacaatgtggacgccacctttcaagacctg
gagaaacctggggttgatgaggaacctcatcaagtgctgctgagatatgaagatggttat
caataccaaaatatctttggtccattggtgaagctggaagcagactatgacaagaggcta
aaagagtcgcagacccaagagggcattgaagtccgttgggatgttggtctcaacaagaag
acaattgcctactttaccttggcaaaaactgacagcgatatgaagctgatgcatggtgat
gaactaagattgcgatacgtgggcgagctccacaaagcctggtctggcgtgggccacgtg
atcaaggtcccggacaactacggcgatgacgtagggctagagctcaaaagcggcgccggc
gccccgctcgactgcacctccaacttcgtcgtagactttatctggaagagcacttctttt
gatagaatgcaactggctctgcgcaagtttgccgtggacgactcttcggtgtctggttac
atctatcggcgcctgctgggccacgaggtggaagaagtgctgtttcgcgtgcatctgccc
aagcatttcagtgcgcctaacctgcctgacctcaacaggtcacaggtttacgccgtgaaa
cacgccctccagcgaccgctgtccttgatccaaggtccgccgggcacgggcaagactgtg
acgtccgcaaccatcgtgtaccagctggtgcggcagaacggcgggcccgtactcgtgtgc
gcgccgtccaacaccgccgtcgaccagctcacggagaagatccaccgcacggggctgaag
gtggtccggctgtgcgccaagtcgcgcgaggccatggagtcctcggtgtcgttcctcgcg
ctacacgagcaggcgcgcgcgctcggctccgccgacagcgagctgcgcaagctgacgcgt
ctcaaggaggaggcgggcgagctgtccgccgccgacgagcgccgctaccgcgcgctgcgc
cgcgccgccgagcgccgcctgctcgacgccgccgacgtcgtgtgcaccacctgcgtcggc
gccggcgacccgcgcgtcgcgcgcatgcgcttccagtccatcctcatcgacgagggcatg
cagtccaccgagcccgagtgcatggtgcccgtcgtgctgggcgcgcgccagctcatcctc
gtcggcgaccactgccagctcgggcccgtcgtcatgtgcaagaaggccgccaaggccggt
ctcagccagagcctgttcgagcggctcgtcgtgctcggcatccggcccttccggctcgag
gtgcagtaccgcatgcaccccgagctctcgcgcttcccctccgacttcttctacgagggc
tcgctccagaacggcgtcagcgccgaggagcgccgcctgcacaagatcgacttcccctgg
ccgcgccccgatcggcccatgttcttctatgtgacccagggccaggaggagatcgcgggg
tccggaacctcctacttgaacagaaccgaagccgcgaacgtcgaaaagctgacgacgcgc
ttcctcaaggcgggagttcgtcccgagcagataggcatcatcactccatacgagggccag
cgctcgtacctggtgcagcacatgcagtaccagggcagcctgcacgccaagctgtaccag
gagatagaggtggccagcgtcgacgcgttccagggccgcgagaaggacatcatcatcatg
tcgtgcgtgcgctccaacgagcaccagggcatcggcttcctcagtgacccgcgccgcctc
aacgtggccctgacgcgcgccaagtacggcctcatcgtcgtcggcaaccccaaggtgctc
agcaagcagccgctgtggaaccacctgctcgccttctacaaggagcggcgcgtgctcacc
gagggcccgctctccaacctgaaggagtccgctatccagttcgccaagcccaagaagctg
gtgaacgcgcagaatccgggctcgcacttcatgtcgacgtcgatgttcgacgcgcgcgag
gccatggtgccgggctcggtgtacgaccgcgcgcggccgctgcgcgacccgctggcctac
gtggggccggagcgcgcggcgctgctgcacgcgcccgtgccgcacgccgccttccaggcg
caccgcggcctgctgcgccccgcgccgccccaggccgcgcgcgctcgccgccgcccgccg
cgcctcagccaggagccgctctcgcagcagccgccgctctcgctctcgcagggcgcctcg
cagcccgacttcagccaggagtcggcggcgcccgactgcccctcccagccggacggcctg
ctctcgcaggactccacctaccagggcgggttccgcgcacgttgcagtcagtactga
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