Choristoneura fumiferana (eastern spruce budworm): 141439700
Help
Entry
141439700 CDS
T11020
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
141439700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141439700
03032 DNA replication proteins [BR:
cfum03032
]
141439700
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
141439700
mRNA cycle factors
Common to processing body (P body) and stress granule
141439700
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
141439700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Myticin-prepro
Motif
Other DBs
NCBI-GeneID:
141439700
NCBI-ProteinID:
XP_073960148
LinkDB
All DBs
Position
21:complement(10886288..10891252)
Genome browser
AA seq
982 aa
AA seq
DB search
MQEECSDILEAKIAERNEKAKKLYRYVSDVARRVDEATASSRTINDLFSSNIEVLRQKLR
ENCEKLLFLDPSNYGKKSLELLWRKGYYEAVSASRKLQESDNAADNCLFTHIVCGIGHFH
HLITRIQTDMKILPGKLDYEPILEDWDTEDVPGNPQSDEDIQFGRYVLYQCLIYLGDLSR
YQVEILHNFEPSTAARYYLQAAHIDMCSGMPFNQLGNLYLDKNYNLDSVCYYIHCLSCTT
PFEGASGNLAKILEKQMQYAETLNDTETYTQTEHIQNTVANFLSLIDIWYFSKNDTNVPQ
RCNKIAHELKIAMEFVKSPLPDMNKDYEEYVQAIEEENTNPSYLTGNLVHKIVQICLFTV
SKMVEIDEQKAFAGKAFTLALLSQLLQKLQKQLEELGFKNPSQKYRGRTVSVNDVEPEKV
ERQDDVMDEKSVTDEIIITNPLKPAEIEIDDTKEMITDDDSKKLQNGNSKLNSKKVVAKR
RRRRRMDSSDSSELSDADTESSEMTTDEASSDDDDVVSNSTDKSDDSRSEGSICNGSDGE
HIAEEHTEDVEIKETQPVKNDNIEVNGKDNNHKKHMKETAPGNNPLKEEEIQNFLLGDNF
LPSIKLLLDWVLLEKDLILSCGDSGESLFQCVVDLLNIFTFYFYPKSNDSNSQCKILDYA
KHIAKKLKLEYKKIPLPEDLNLRGTNICKFDKDAAEWQILDKYKPSVYEENVMRILNFID
FGNQIAKIIPRIRFNRSMKIFYLKKSPAAKLNTKINHKRSREWHNSKTPHVETSEGGLLR
RLGRLWLTSQVRELERSGRAAAGPALLALDAAALHSHLRRVKQLLRARSFVLLVPAVVLQ
ELDDLKREKSGARDAIRWLEVQLRSGSRFLRAQRPGQSRPLPLLKYPKKAPPHVNNFIQI
LEFCHHLTADEKQAHIGQGEPERQGKSTPLLILLVGNEPGDGEQYKEFSLTGAAQSAGIS
VEYIGDFYAKCRQVIHKSGKKR
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaagaatgtagcgatattttggaggctaaaattgctgagcgcaatgaaaaagcc
aagaaactatatcgatatgtgagtgacgtcgcaaggcgtgtagacgaggcaaccgcatcc
agtcgcacaataaacgatctgttttcttcaaacattgaagttctccgtcagaaacttaga
gagaattgtgaaaaattactcttccttgatccatctaactatggtaagaagtctctggaa
ctcttatggcggaagggctactatgaagctgtatctgcatctagaaagcttcaggaatcc
gacaatgcggctgataactgcctttttacccacattgtgtgcgggatagggcatttccat
cacctcattacgagaatccaaactgatatgaaaatactaccaggcaaattggattacgag
ccaatactggaagactgggacacagaggatgttccaggaaatccccaaagtgatgaagac
atacagtttggccgatatgtgctctatcaatgcttgatctaccttggagatttgagccga
tatcaagttgaaatattgcacaattttgaaccatctactgctgcgcgatactatctgcaa
gctgcccacattgatatgtgttcaggcatgccttttaatcagttgggcaacctttatcta
gacaagaactacaacttggattccgtttgctactacatacattgcttaagctgcaccaca
ccttttgaaggggcttcaggtaacttagcaaagatcctggaaaaacaaatgcagtatgct
gaaacattaaatgatactgaaacttacacacagactgaacatattcaaaacacagttgca
aacttcttatccctaattgatatatggtatttcagcaaaaatgacaccaacgtaccacag
aggtgcaataaaatagctcatgaattaaaaattgcaatggaatttgtaaaatcaccatta
ccggatatgaacaaagattatgaagagtatgttcaggctatagaagaagaaaataccaat
ccatcttatctaactggtaacctggtccataaaattgtacaaatttgtctcttcacagtc
tcaaaaatggttgaaatagatgagcaaaaagcatttgcaggtaaagcttttacactagca
ctgttgtcccagcttcttcagaaactacaaaagcagttagaagagttagggttcaagaat
ccttctcagaaatatagaggccggacagtgtcagtgaatgatgtggaacctgaaaaagtg
gagagacaagatgatgtaatggatgagaaatcagttacagatgaaattataattacaaat
ccactgaaaccagcagaaattgagattgatgacacaaaagagatgatcactgatgatgac
agcaagaagttgcaaaatggtaatagtaaactgaattcaaagaaagttgtggcaaagcgc
cgacgtaggaggcgtatggattcttctgatagctcagaattgagtgatgcagacactgaa
agcagtgaaatgactacagatgaagcaagttctgatgacgatgatgttgtatcaaattca
actgataaatctgatgattctagaagtgaaggatcaatttgcaatggttctgatggagaa
catattgctgaagaacacactgaagatgttgaaataaaagaaacacaacctgtaaaaaat
gacaatattgaagtgaatgggaaagacaacaatcacaaaaagcatatgaaggaaacagcc
cctggaaataacccactcaaggaagaagaaattcaaaattttttgcttggggataacttt
ttgccaagtattaagctactattagattgggttcttttagaaaaggatttgattctctct
tgtggtgacagtggcgaatcactttttcaatgtgttgttgatctattaaatattttcact
ttttatttctacccaaaaagtaatgattcaaatagtcagtgcaaaattctagattatgcc
aaacatattgccaaaaagctgaagctagaatataagaagattcctctgccagaagatctg
aatttgagaggtactaacatctgcaaatttgacaaagatgctgcagaatggcaaatatta
gacaagtacaagccctcagtgtatgaagaaaatgttatgagaatactgaattttattgat
ttcggaaatcagatagctaagattatacctcgtattagattcaacaggtcaatgaaaata
ttttatttgaaaaagagccctgctgccaagctgaataccaaaataaaccacaaaagaagt
agggagtggcacaactctaagacaccacatgtggaaacctccgagggtgggttacttcgt
cgcctgggtcggctgtggctgacgtcccaagtccgcgagctggagcgcagcgggcgcgcc
gccgccggcccggccttactggccctcgacgccgcagccctgcactcgcatctgcgccgc
gtcaaacaactactgcgggccaggagcttcgttctgctcgtgcctgctgtcgtgctacaa
gaactagatgatctgaaacgcgagaagagcggcgcccgagacgcgatccgctggctggaa
gtacagctccgcagcggttcccggttcctgcgcgcacaacgccccggccaatcgcgcccg
ttacccctcctcaaataccccaaaaaagcgccaccccacgtaaacaacttcatacaaatc
ctagaattttgtcaccatcttactgccgatgaaaagcaagctcacattggccaaggcgaa
ccggaaaggcagggaaaatccacgccactcctcatcttactcgtgggaaatgaacctggc
gatggggaacaatataaggaattcagcctgacgggagcggcgcaatcggcaggaatctcc
gttgagtacatcggagatttctacgccaaatgtcgtcaggtcatccacaagagcggcaag
aaaagatga
DBGET
integrated database retrieval system
