Choristoneura fumiferana (eastern spruce budworm): 141439770
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Entry
141439770 CDS
T11020
Name
(RefSeq) U3 small nucleolar RNA-associated protein 15 homolog
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
141439770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cfum03009
]
141439770
Ribosome biogenesis [BR:
cfum03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
141439770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
UTP15_C
WD40_CDC20-Fz
WD40
WD40_WDHD1_1st
EIF3I
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_EML
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_NWD2_C
Beta-prop_HPS5
WDR54
B-prop_COPA_B_2nd
Beta-prop_DCAF4
Beta-prop_IFT122_2nd
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
141439770
NCBI-ProteinID:
XP_073960246
LinkDB
All DBs
Position
21:complement(13225845..13228143)
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AA seq
522 aa
AA seq
DB search
MAKVSFPFKKTNKSLFLSSTSAVTQDSLYWKKLGLPVLVKEYGAIDYLDFCPVEPYYFAA
TCSVRVQIYDPITKVVAKNLSQFVQGAYGASFRRDGRLLVAGSEEAVVKLFDVQSKNVLR
VFTGHTGPVHRTYFTKDQTKVLSCSDDKSVGIWDIATEARIASFSEHTDYVRAGATSPIS
PEIILSGGYDNTLKLYDCRSNETVLTVNHGEPVESTLFLPSGGIFISAGGTEVKVWDIFN
GGKLLSCISQHHKTVTSLRLSSNNSRLISASLDRHLKIYDISTFNVVHNIDFPNAILSMA
ISDNDDILAVGMVDGVISISKREHSKTKKTVEKKGIYKFAADVVPNANVDITVTKTRIAK
EPKMDKCLRKLEYTRALSNALKNSEKYPIRAAALLQELLKRNVLHPAMSGLDDYQIRMLF
IFTRKHLGDAKFNRTIIDVLNVIVDVFGNQIHQLSKDNQFLYENIAKKVNDEIEVCKSVS
ELEGAISLLLSGAQAGSAASSLDLNETLAPSTKALKEIVIDV
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggctaaagtttcctttccttttaagaaaacaaataagtctttattcttgtcatctaca
tcagcagtaacacaggattctctttactggaagaaacttggattgccagttctcgtcaaa
gaatacggggctatcgattacttggatttttgccctgtggagccctactattttgccgca
acatgctccgtgagagttcaaatatatgacccaataactaaggtagttgctaaaaacctt
tcccaatttgtgcaaggagcctatggtgcttcgttcagacgtgatggccgcttgcttgtg
gctgggagtgaggaagctgttgtgaaactgtttgatgtccagtctaagaatgtactcagg
gtattcacaggacatactggaccggtccacaggacttactttacaaaagaccaaacaaaa
gtccttagttgttcagatgacaaatcagttgggatatgggacatagccaccgaagcaaga
attgctagtttctcagaacacacagactatgttcgagcaggagccacaagccccatctct
ccagaaatcatcctatcaggtggctatgacaatacactcaaactgtatgactgcaggtca
aatgagactgtacttacggtaaaccatggagaaccagtggagtccacactcttcctgcca
tcaggtggtattttcataagtgctggaggcacagaagtcaaagtatgggacattttcaat
ggagggaagctactatcttgtatttcacagcaccacaaaactgttacatcattgcgactt
tccagcaacaacagcagactgatctctgcttccttggatagacatctcaagatctatgac
atttctacattcaatgttgttcacaacatagatttccctaatgctattcttagtatggct
atatcagataacgatgatattcttgcagttggaatggtagatggtgtcatatctatcagc
aaacgggaacattccaaaactaaaaagactgtagagaaaaagggcatctacaaatttgca
gctgatgtagttcccaatgctaatgtggacataacagtaactaaaactcggattgccaaa
gagccgaaaatggataaatgcttaagaaagttagaatacacaagggcactttctaatgca
ttgaaaaattctgaaaagtatccaattagagctgcagctttgctacaagaattgcttaaa
agaaatgtattgcacccggcaatgtcaggtctggatgattaccaaatcagaatgttattt
atatttacacggaaacatttaggcgacgcaaagtttaacaggaccattattgatgttttg
aatgtcattgtagatgtgtttggcaatcaaatccaccagttatcgaaagataatcaattt
ttatatgaaaacatagctaaaaaagtgaatgatgagattgaggtgtgcaaaagtgtgagt
gaactagaaggagcaatcagcttgttgctctctggagcgcaggcaggatcagcggcaagt
tctttagatttaaacgagacacttgcgccatctactaaagctctaaaagaaattgtaatt
gatgtttaa
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