Choristoneura fumiferana (eastern spruce budworm): 141439904
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Entry
141439904 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141439904
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
141439904
Spliceosome [BR:
cfum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
141439904
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
R3H
DEAD
AAA_19
nSTAND3
Ank_2
HA2_N
AAA_22
Ank_5
YTH
T2SSE
AAA_16
AAA_30
NACHT
AAA_14
PhoH
Ank
Cas3-like_C_2
FtsK_SpoIIIE
AAA_11
AAA_25
Motif
Other DBs
NCBI-GeneID:
141439904
NCBI-ProteinID:
XP_073960457
LinkDB
All DBs
Position
21:complement(2353979..2369331)
Genome browser
AA seq
1335 aa
AA seq
DB search
MSNKKGKRNLGNKHFPIAESVSIALKIQLDKFLSDENDTELKFPTFLSAQERGFIHETVA
KLGLKSKSRGKGVNRYLTIYKRVGSTIIQNDAKLILDSNMRCSITELFNAFPITSKEKDD
LSCCPEKERSPQLAHKTVGQLNNGVAQVPNTTYNPELVKFREKLPVYEQRQELLNAITHN
QVVIVAGATGCGKTTQLPQLVLEAWQARAQPARIYCTQPRRLSAVSVAERVAYERMEKIG
QSIGYQIRLESRVSPRTVLTYCTNGLLLRTLMCTDTQLAGVTHVFVDEVHERDKFSDFLL
IALRDALPRCKDLKLILMSATADTQIFSRYFNNCPVITIPGRLHEVQRYYLEDILKITQY
RNNKMAAAERDLRHKLHTGDSYWSRLEGQQQEEGSSSSSSSKDSKEEEPALDAALQADMD
EFLDDCFKEGSLDSFCQILYMYLSEGVPVSCARSGTGRTGLMAAAAHGLTDTAQQMLQIG
ADPLVCDASGKTARDYALAGGHAATAALLASLAPPQDTHNAAKDEAADRFLLDVYHHTVS
EDFIDHDLMLALIKHIHINLPKGSILIFLPGYDDIVTLRDLVQNCTEMNALKYQIFTLHS
NMQTLDQKKVFNPLPNARKIIISTNIAETSITIDDVVYVVDSCKVKEKYYESSGGVCSLQ
CVWTSRAGCQQRAGRAGRTKPGHCFHLCSKRRFQTLPLNSIPEILRVPLQELCLHTKLLA
PGNTPIADFLSKALEPPSFLAVRNAVTLLKTIGALTPMEDLTEIGQHLLDLTVEPKLGKM
LLYACVMKCLDPILTIVCSLANKEPFQISMNPENRKRGSVARKEFAADCYSDHMALLRAF
QAWQSARANGSERAFCAKNLICGATMEMIVGYRAQLLAQLRALCLVKARGSGDIKDVNLN
SEKWHVVKAVLVSGLYPSIARVDRDSSTLRTFKEVKVAFHPSSTLHRGDGIAGSHKSVQN
LPTDWVVFEEISRAGRFCFIRCNTLVTPLTIALFGGPLRLPPGALTQRANPPGLSSDSDS
EADENNSSPDTAVLTLDEWMAFTADASDAISVYYLRQKLCALVIRRMSNPAKPMTPLDEQ
ILSTCVHVLAAEEKNVGLNQPSGIGQRPKPLTVDAPNWRTRAEEEQYRHDKHYPHPHHQE
APPRARGWXAPPPPGPAARPVSPNGKTLLANIEKYSEVGDSNARYFVARADEAGEAAGGA
PFAAATLTKLHKIKQEGHRVVIFVAREAAARFVGCAALADHGLDWLCSVPLPYHCVRHVS
NSLAGNSRVVGSADGAELCAGAARALWAALRARRRPPTHTPTPTPTPTLTPTSPSTSTTS
NTTMSTVADLHRNDD
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataaaaagggtaaacgtaatttagggaacaagcacttccctatagcagagtca
gtgagcatagctctgaaaatccaactggataagtttttgagtgatgaaaatgacacggaa
ctcaagtttccgacgttcctgtcggctcaggagcgaggatttatccacgagactgtcgcg
aagctgggcttgaagtccaaatcgcgcgggaaaggagttaaccgctatctaacaatatac
aaacgggtgggctcaacgatcattcagaacgatgcgaagctcatcctggattccaacatg
cggtgcagtatcactgagctgttcaacgcattcccgatcactagcaaagagaaggacgac
ctcagctgctgcccggagaaggaaaggagccctcagttagcccacaagactgttgggcag
ctgaataatggagttgcgcaagtgccaaacacaacatataatccagaattagttaagttc
agagaaaagttgcctgtttatgaacagagacaggaactgctcaatgccatcacacacaat
caggtggtgatagtagcgggcgccacgggctgcggcaagacgacgcagctgccgcagctg
gtgctggaggcgtggcaggcgcgcgcgcagccggcgcgcatctactgcacgcagccaaga
cgcctctccgccgtctccgtcgccgagcgggtggcgtacgagcgcatggagaagatcggg
cagtccatcgggtaccagatacggctggagtcgcgcgtcagcccgcgcaccgtgctcaca
tactgcaccaacggactgctgctgcggacgctcatgtgtacggacacacagctcgccggc
gtgacgcacgtattcgtggacgaagtgcatgagcgagacaaattcagcgacttcctgctg
atcgctctgcgggacgcgttgccgcgatgcaaggacctcaagctcatactcatgtctgcc
accgcggacacgcagatattctccagatacttcaacaactgcccggtgatcacgatcccg
ggccgcctgcacgaagtacagcggtactacttagaggacattctcaagatcacgcagtac
aggaacaacaagatggcggccgccgagcgagacctgagacacaagctgcacacgggggac
agctactggtcgcgtctcgagggtcaacaacaagaggaaggcagcagcagcagcagcagc
agcaaggacagtaaagaggaggagccggccctggacgccgcgctgcaagctgacatggac
gagttcttagacgactgctttaaggagggcagcttggactcgttctgccagatcctgtac
atgtacctgtcggaaggcgtgccggtgagctgcgcgcgcagcgggaccggccgcaccggc
ctcatggcggccgccgcgcacggcctcactgacaccgcgcagcagatgctgcagatcggt
gcggacccgctagtatgcgacgcgagcggtaagaccgcgcgggactacgccttggcaggt
gggcacgccgccacagccgccctgctagcctccctcgcgcctccacaggacacccacaac
gcggccaaagacgaggccgcggaccgcttcctcctcgacgtgtaccaccacaccgtctcc
gaagacttcatcgaccacgacctcatgctagctctcatcaagcacattcacataaacctg
cccaaagggagcatactgatctttcttcccggctacgacgatattgtgacgctgagggac
ttagtgcagaattgtacggaaatgaacgcgttaaaataccaaatattcacgctccacagc
aacatgcagacgctggatcagaagaaagtgttcaatcccctcccgaatgcgagaaaaatc
ataatttccacgaacatagcggagacttctataacgatagacgatgtggtttatgtggtg
gattcgtgcaaagtcaaggagaaatactatgagtccagcggtggtgtgtgctcgttacag
tgcgtgtggacctcacgagccggttgccagcagcgcgccggtcgtgccggaaggaccaag
ccgggccattgcttccacttgtgctccaagcggagattccaaacgttacccctcaactcc
atccctgagatcctcagagtgccgctccaagagctatgcctccatacgaagctgctggcg
cctggaaacacaccgatagccgacttcctttcaaaggcattggaacctccatcgttcttg
gccgtgaggaacgccgtcacgcttctgaagaccatcggagcgctgacccccatggaagac
ttgacggagatcggtcagcatctcctggacttgacagtggaaccgaaacttgggaagatg
ctgctctacgcttgcgttatgaagtgcctggatcccatattgacgatagtgtgcagttta
gcgaacaaagaacccttccagatatcgatgaatccggagaataggaagcgaggaagcgtg
gcgaggaaagaattcgccgcagactgttactccgaccatatggcgcttttgagggccttc
caggcgtggcagagcgccagagcgaatggctcagaacgcgcgttctgcgctaagaaccta
atctgtggtgctaccatggagatgatagtaggatacagagcgcagctgctagctcaactg
agagctctatgcttagtgaaagcccgtggctccggagacatcaaagacgtgaatctaaac
tcggaaaaatggcacgtcgtcaaagctgtgttagtgagcggtctatacccttctatagcc
cgagtggaccgcgattccagcaccctgagaaccttcaaagaggtcaaagtggcgttccat
ccgagttcaactcttcaccggggcgacggcatcgcaggctcccacaagtcagtgcagaac
ttgcctacggattgggttgtgtttgaagagatatcacgggcgggaagattctgcttcata
aggtgtaatactttagtgacgccgttgactatagcgctgttcggggggcctttgaggttg
ccgcctggtgctttgacgcagcgagcgaaccccccagggttgtcaagtgattcggacagt
gaagctgatgagaacaattcctctcccgatacagcggtgctcacactggatgaatggatg
gcgttcacggcggacgcttcggatgcgatcagcgtttactatttgaggcagaagctgtgc
gcgctggttattcgtcgtatgtcgaatccggcgaagcccatgacgccgttggacgagcag
atattgagcacctgcgtgcacgtgctggcggctgaagaaaagaatgtcggtctcaaccag
ccttcaggcatcggccagcggccgaagcctctcacagtggacgcgcccaactggcgcacc
cgcgccgaggaggaacagtaccggcacgacaaacactacccccacccgcaccaccaggag
gcgcccccccgcgcccgcggctggnccgccccacccccacctggccccgccgcgcggccc
gtctccccgaacgggaagaccttgctagctaacatcgagaagtactccgaagttggggat
agtaatgccaggtactttgtggcgcgcgcggacgaggcgggcgaggcggcgggcggggct
ccgttcgcggccgccacgctcaccaaactgcacaaaatcaaacaggagggtcaccgcgtg
gtgatattcgtggcgcgcgaggcggcggcgcggttcgtgggctgcgccgcgctcgccgac
cacggcctggactggctgtgctctgtgccgctgccctaccattgcgtgaggcacgtgtcc
aactcgctggcgggcaactctcgcgtggtggggtcagcggacggcgcggagctgtgcgcg
ggcgcggcgcgcgcgctgtgggccgctctgcgcgcgcggcgccgcccccccacacacacc
cccacccccacccccacccccacgctcacccccacaagccccagcacaagcacaaccagt
aacacaaccatgtctacggtagctgacttacacagaaacgatgactaa
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