Choristoneura fumiferana (eastern spruce budworm): 141440041
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Entry
141440041 CDS
T11020
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141440041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141440041
Spliceosome [BR:
cfum03041
]
Complex B
Other components
Prp19-related factors
141440041
Complex C
141440041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_YTH1
zf_CCCH_4
Torus
RRM_occluded
zf-CCCH_4
zf-CCCH_2
zf-CCCH
zf-CCCH_10
RRM_PARP14_3
RRM_7
Nup35_RRM_2
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
141440041
NCBI-ProteinID:
XP_073960600
LinkDB
All DBs
Position
21:complement(11790538..11797653)
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AA seq
405 aa
AA seq
DB search
MAVSKSTNTYNRQNWEDSDFPILCQTCLGDNPYIRMTKEKYGKECKICARPFTVFRWCPG
SRMRFKKTEICQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKIQDDLPRNEVNKEYYIQN
LDSQMSKFDSTQPSNSALKSKGASDLLLRLARTAPYYKRNRPHVCSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGVNDPVAEKLMRRAAAMPALPPPEDRTVTTLYVGNLP
ENITEEELRGHFYQYGEIRSLTLVPRAQCAFVQYTTRSASEHAAEKTFNRLVIGGKRLTI
KWGKSQGRQGTNEKNEIMPALEPVPGLPGALPPAPAFLHPFPPQMPPPPNRPNDFFNLHH
YGPAAWGGWGAPPAPPPPAPPAQPLHYPSQDPSRLGHAHANAPQT
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgtcgaaatccacaaacacgtacaatcgtcaaaattgggaagattcggatttc
ccaatattgtgccaaacatgtcttggggataatccatacatccgaatgaccaaagaaaag
tatggcaaggagtgtaagatatgtgctcgcccattcactgtctttcgttggtgtccaggc
tctagaatgcgtttcaagaaaacagagatttgtcagacatgttccaaactgaaaaatgtt
tgtcaaacatgcctgttagatttggagtatggtttgccaatccaagtcagagatgcagcc
cttaagatacaagatgatctacctcgtaatgaagttaataaggaatattacattcaaaac
ttagatagtcagatgtctaaatttgattctactcagcctagtaattctgcactcaagtct
aaaggtgcttcagacttactattgaggttggcacggactgctccctattacaaacggaac
cgaccccatgtgtgctcattctgggtgaaaggcgagtgtcggagaggagaggagtgtcca
tatcggcatgaaaagcctactgatccggatgatcctttggctgaccaaaatattaaggac
agatactatggtgtaaatgacccagtagctgagaagttgatgcggcgagccgcagccatg
cctgcactgcctccccctgaggacaggactgtgaccacactctatgtcggcaatctacca
gaaaacattactgaggaggagctaagaggacacttctatcaatatggagaaataaggtct
ctcaccctggtgccacgagcgcagtgcgcttttgtacagtatactaccaggagtgcatcc
gagcatgctgctgagaagactttcaaccgactggtcatcggaggcaagagacttaccatc
aagtggggcaagtcgcaaggacgtcaaggcaccaacgagaagaacgaaataatgcctgct
ctggagcccgtgcccggcctgccaggggccctgccaccggcgcccgccttcctgcatccg
tttccgccacagatgccgccgccgccgaaccgtcccaacgacttcttcaacctgcaccac
tacgggccggcggcgtggggcgggtggggcgcgccgcccgcgccgccgccgcccgcgcct
cccgcgcagccgctccactaccccagccaggacccctccaggctcggacatgcgcacgcg
aacgcgccacaaacgtaa
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