KEGG   Choristoneura fumiferana (eastern spruce budworm): 141440188
Entry
141440188         CDS       T11020                                 
Name
(RefSeq) exosome complex component RRP41-like
  KO
K11600  exosome complex component RRP41
Organism
cfum  Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cfum00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    141440188
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfum03019]
    141440188
Messenger RNA biogenesis [BR:cfum03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     141440188
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     141440188
SSDB
Motif
Pfam: RNase_PH
Other DBs
NCBI-GeneID: 141440188
NCBI-ProteinID: XP_073960752
LinkDB
Position
22:complement(7339491..7342885)
AA seq 135 aa
MVTTTDAASINKIYADGGAFCASVNAASLALINAGIPTRGVLVASSASMAWRGAEPQPLV
DVGHVEEAAGGVCLTVAAMPTIGSIALLEMSHRLHMDYFDLVFSRAMQGCKDIQAILDAA
VREHLAEGWTQKLDS
NT seq 408 nt   +upstreamnt  +downstreamnt
atggtaacaactacggacgcagcttcgatcaataagatatatgcggacggcggagcattc
tgcgccagcgtgaacgcggcgtcactagctctgatcaacgcaggcatcccgacgcgcggc
gtgctcgtggccagctcggccagcatggcgtggcgcggcgcggagccgcagccgctggtg
gacgtgggccacgtcgaggaggccgccggcggcgtctgcctcaccgtcgccgccatgccc
actattggaagcatagcattactggagatgtcccatagactgcacatggactactttgac
ctagtctttagcagagccatgcaaggttgtaaggatattcaggctatattagacgcagca
gtgagggaacatctagcagaagggtggacacaaaaactggactcataa

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