Choristoneura fumiferana (eastern spruce budworm): 141440449
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Entry
141440449 CDS
T11020
Symbol
Gapvd1
Name
(RefSeq) LOW QUALITY PROTEIN: GTPase activating protein and VPS9 domains 1
KO
K27566
GTPase-activating protein and VPS9 domain-containing protein 1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cfum04131
]
141440449 (Gapvd1)
Membrane trafficking [BR:
cfum04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
141440449 (Gapvd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGAP
VPS9
DUF5601
KCTD1-15_CTD
Motif
Other DBs
NCBI-GeneID:
141440449
NCBI-ProteinID:
XP_073961071
LinkDB
All DBs
Position
Z:complement(624488..688294)
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AA seq
2129 aa
AA seq
DB search
MMQSTTEGCMNIAELANQLTREKIFISSERQLLQNLNEELEKSALELLQAAWICSQQRQN
LTDLMNARCEAESIAACQRASQLEGTTFIDVYKVLKYKEALALGELLGWLRDSPHLVSLC
LLLGEESLPPTLPXSLVAGLYGSARLPADRTRLLAVIRSLMKHQLATASDPRKLFRSGKS
ALACLYSVFRDGHAPARQFLVAALQAPVMFALHEDELFLDCDPDKAMERFSPQDRLKKFG
QTNSAEYAAKLARYRKWTVQSLYNLTSRFINSLRENWANFPASIAWLIQQSVHLIKQHSG
TSDPELHALCTDLVLNNFICPAILNPEAHGVVDTPVSYIARNNLMQVAQILQLLCLSKHQ
EMEPKLRDLCSKFESSCVWSLVDEVCGAALAPPARGPRRPRRAAHRRAARPRRRALLAHD
LHTLITFLKRISSKLNNNTPSVTSEEMSSGSGPAAEASAYSESGSEGGSSSSAAGASLAA
LLQTLEPNYRSRLHDLLRKMPDLSRPSRQSPPDEPHKRSILAKVPKRLARGGAAGPAEPG
EPDGNEVYVIQLARQEENDYVGLVPESKVLECHCGGSEGDAEDAGSALAAPPGAPVQKRT
RFSVSHDEVSLGNTSDNLEAVSEAASNHSVTSSLELETEDQNDNLSDMVSANVSGRGSPN
ISGRETPSSQVTDGDAAGDAPQRRLPQNAPVSQANSAQAKLLKQTRNDIEDKFCKFEIKK
LLEGDETVSIMSDTWSTDVLASDSETIGDSCDQTLVAVNQNVVANTNAPDVSETASESAW
SMDVLASDSDRNTEVDTDDCVSVAARSDTSWPRRLSQPEEPAPAKHNQSGAYKKPDVNSS
PRHTARPYQPNRAGGGYLSATAQLTRGGELDLSSLAPRVYPENRKSILVNGYPVMTCYAT
SAPDSPSAAPAPLPNDVFDYVSQNGNNSQSESTLEGTKNSQSDATSQWVDDSFPPAHHSA
GRPFPSTSKYGMPSTSKTYEENDIMDRSLNSSESSFNALSVSQYDRRFDSGIDTDRNDEA
RSTITDLMTRMSSATISTSNLVNNLTSRIVKSEIRTSIVSISSSRIEKKRDTSNMSLSTL
SVNSETSVSDKSSSQDVNSENVTERRVSPPPVKTVSTGAIPKSISFDATAEKSQRRRTGG
DDGIAGNLDELKNNVKRSGGNLLHKIKMFRQKGRAHHPNDIKLSEEEARSDDGSRTEPAP
AESSDDILAKYRRKSSTDSSRQRRAQRRVSDVPDAELDRVEGVLDLNDPEVFNSMKKKLR
LVLSNPDLLCLEYVPNRCTSTSLVEWVRAAGASAASEAGAAHAGEVARALAAAGARGELL
AAALRADLAARRPYAKYLASCRAALTHMLHALRRGAYKKPDVNSSPRHTARPYQPNRAGG
GYLSATAQLTRGGELDLSSLAPRVYPENRKSILVNGYPVMTCYATSAPDSPSAAPAPLPN
DVFDYVSQNGNNSQSESTLEGTKNSQSDATSQWVDDSFPPAHHSAGRPFPSTSKYGMPST
SKTYEENDIMDRSLNSSESSFNALSVSQYDRRFDSGIDTDRNDEARSTITDLMTRMSSAT
ISTSNLVNNLTSRIVKSEIRTSIVSISSSRIEKKRDTSNMSLSTLSVNSETSVSDKSSSQ
DVNSENVTERRVSPPPVKTVSTGAIPKSISFDATAEKSQRRRTGGDDGIAGNLDELKNNV
KRSGGNLLHKIKMFRQKGRAHHPNDIKLSEEEARSDDGSRTEPAPAESSDDILAKYRRKS
STDSSRQRRAQRRVSDVPDAELDRVEGVLDLNDPEVFNSMKKKLRLVLSNPDLLCLEYVP
NRCTSTSLVEWVRAAGASAASEAGAAHAGEVARALAAAGARGELLAAALRADLAARRPYA
KYLASCRAALTHMLHALRRQISQVRGECAACAQTAAAARAQQQLERGGALRRLARHHAAA
HAPPGGELVDEKARRLMANIKTMTADVKNDPSWEGASAAQLEALETAVERAAFARLYLHV
LFPNGDGDIARDQVLAEHIRRLAAGMSAARAGVGARHLWAAPFPRAQLLLAHLPVYRTPR
DKVQCVMRCVTCVMAVLGLTEGSAPSADDLTPVLVYIILKVNPPSLLSTIEFVNTLGGAA
LQGPALYWWTQFCAAVAYIKTMDYPRHDS
NT seq
6390 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagtccacgacagagggttgcatgaatatcgccgagttggctaaccagctgact
cgggaaaagatatttatcagctccgagaggcagttattgcagaaccttaacgaagagctg
gagaaaagtgccttagagctactccaagcggcctggatatgttcgcaacagcggcagaat
ctgacagacttgatgaatgcgcgatgcgaggcagagtcgatcgcagcctgccaaagagcc
agccagctcgagggcacaacattcatagacgtctacaaagtcctgaagtacaaggaggcg
ctagccctcggggaacttctaggctggctccgcgactccccccacttggtgtctttatgc
ctgttgctcggcgaggagtccctgccgccgacgctgcccnccagcctggtggcggggctg
tacggcagcgcgcggctgccggccgaccggacccggctgctcgccgtcatacggtcgctg
atgaagcaccagttagccacggcgtcggatcccaggaaattgttccgttcgggcaagtcg
gccctggcgtgcctctactcggtgttccgggacgggcacgcgccggcgcgccagttcctc
gtggccgcgctgcaggcgccggtcatgttcgcgctgcacgaggacgagctgttcctggac
tgtgacccggacaaggccatggagcgattttcgccccaagaccgtctaaagaagttcggt
cagacgaacagcgcggagtacgcggccaagctggcccgttacagaaagtggaccgtccag
tcgctttacaacctcactagccggttcatcaactcgctgcgggagaactgggccaatttc
ccggcctccattgcctggctgatacagcagagcgtgcaccttatcaaacagcactccggc
acatccgacccggagctccacgcgttgtgcactgacctagtcttaaacaacttcatctgc
ccggcgatcctgaacccggaggcgcacggcgtcgtggacacacccgtgtcttatatagca
cggaacaacctgatgcaagtcgcgcagatactccagctgctctgtctgagcaaacaccag
gagatggaaccgaagctccgcgacctgtgctccaagttcgagagctcgtgcgtgtggtcg
ctcgtggacgaggtgtgcggcgcggcgctggccccccccgcccgcggcccccgccgcccc
cgccgcgccgcgcaccgacgcgccgcccgcccccgccgccgcgctttactcgcccacgat
cttcatactctgataacgttcctgaagcgtatatcgtccaaattgaacaacaacacgccc
agcgtgacctccgaggagatgtccagcggctcggggcccgcggccgaagcttccgcctac
agcgagtccggcagcgagggaggctcgtcgtcgtcggccgcgggcgcgtccctcgccgct
ctgctgcagacgttggagccgaactaccgcagccggctgcacgacctgctgcggaaaatg
cctgacctcagcaggcccagcagacagtcccccccagatgagccccacaagcggagcatc
ctcgcaaaggtgccgaagcggctggcgcgcgggggcgccgcgggccccgcggagcccggc
gagcccgacggaaacgaggtgtacgtcatacagctcgctagacaggaggagaacgactat
gtcggtctggtgccggagtcgaaggtcctggagtgccactgcggcggctccgagggcgac
gcggaggacgcgggctccgcgctcgcggcgccgcccggcgcgcccgtgcagaagcggacc
aggttctcggtgtcccacgacgaggtgtccctcggcaacacgtccgacaacctggaggcg
gtctccgaggccgcgtccaatcacagcgtcacctccagcctcgagttggagacggaagac
cagaacgacaacttgtctgacatggtgtcggcgaacgtgagcggccgcggcagcccgaac
atctcggggcgcgagacgccctcctcgcaggtcacggacggggacgccgccggggacgcg
ccgcagcgacggctgcctcaaaacgcgcccgtgagccaggcgaacagcgcccaggcgaag
ctgttaaaacagacgcgcaacgatattgaagataagttctgcaagtttgagatcaagaag
ctcctggagggtgatgagacagtcagcatcatgtcggacacgtggagcacggacgtgctg
gcgtcagactcggagaccatcggcgactcgtgcgaccagacgctggtcgccgttaatcag
aatgtcgtggccaacacgaacgctccggacgtctcggagacagcgagcgagtccgcgtgg
agcatggacgtgctcgcttcggacagtgaccgtaacacagaggtggacacggatgactgc
gtgtcggtggcggcccgctcggacacgtcgtggccgcggcggctctcgcagcccgaggag
cccgcgcccgccaaacacaaccagagcggggcttacaagaagccagatgttaacagcagc
ccccgacacaccgcgcggccgtaccaacctaacagggcgggcggcgggtatctgagtgcg
acggcgcagctcacgcgcggcggcgagctggacctgagctcgctggcgccgcgcgtctac
cctgagaacaggaagagcatcctcgtcaacggatacccggtgatgacgtgctacgcgact
tcggctccggacagcccgagcgctgcgcctgcgccgctgcccaacgacgtgttcgactac
gtctcgcagaacggcaacaacagccaatcagaatccacgctggagggcaccaagaacagt
cagtcggacgccaccagccaatgggtggacgactcgttcccccccgcccaccactctgct
ggccgccctttcccctccacttccaagtacggtatgccgtctacgtccaagacctatgaa
gagaacgatatcatggacagatccctgaactcgagcgagagctcgttcaacgcgctctct
gtctcgcagtacgaccgccgtttcgactccggcatcgacaccgatcggaacgacgaagcc
cgctccaccataacggacctcatgacgcgcatgtcatcagccaccatatccacatccaac
ctcgtgaacaacctgacttcccgcatcgtcaaatcggagatacggaccagtatagtcagc
atatcctcgtccaggattgagaagaagcgtgacacttcgaacatgtctctcagcacgttg
tcggttaacagtgagacctcggtatcggataagagttcgagtcaggatgtgaactcggag
aatgttacggagagacgcgtcagcccgccgcccgtgaagacggtgtcgaccggcgctata
cctaagagcatcagcttcgatgctacggcggagaagagtcagaggcggcgtacgggcggc
gacgacggtatcgccggcaacctggacgagctgaagaacaacgtgaaacgttccggcggc
aacttgctgcacaagataaagatgtttcggcagaagggccgcgcgcaccaccccaacgac
ataaagttgtccgaggaggaggcccgcagcgacgacgggtcgcggacggagcccgcgccc
gcggagtcctcggacgacatcctggccaagtaccggcggaagagctcgacggactccagc
cggcagcggcgcgcccagcgacgcgtctccgacgtgcccgacgcggagcttgacagagtc
gagggcgtgctggacctgaacgacccggaagtgttcaacagcatgaagaagaaacttcgg
ctcgtgctgtccaacccagatctgctttgcctggaatacgtacctaaccgttgcacgagc
acgtccctggtggagtgggtgcgggcggcgggcgcgtcggccgcgtcggaggcgggcgcc
gcccacgccggcgaggtcgcccgcgccctggcggcggcgggcgcgcggggcgagctgctc
gcggccgcgctgcgggccgacctcgccgctaggagaccgtacgcgaagtatttggcgtcc
tgccgggctgcgctcacgcatatgctgcacgcgttgagacgcggggcttacaagaagcca
gatgttaacagcagcccccgacacaccgcgcggccgtaccaacctaacagggcgggcggc
gggtatctgagtgcgacggcgcagctcacgcgcggcggcgagctggacctgagctcgctg
gcgccgcgggtctaccctgagaacaggaagagcatcctcgtcaacggatacccggtgatg
acttgctacgcgacttcggctccggacagcccgagcgctgcgcctgcgccgctgcccaac
gacgtgttcgactacgtctcgcagaacggcaacaacagccaatcagaatccacgctggag
ggcaccaagaacagtcagtcggacgccaccagccaatgggtggacgactcgttccccccc
gcccaccactctgctggccgccctttcccctccacttccaagtacggtatgccgtctacg
tccaagacctatgaagagaacgacatcatggacagatccctgaactcgagcgagagctcg
ttcaacgcgctctctgtctcgcagtacgaccgccgtttcgactccggcatcgacaccgat
cggaacgacgaagcccgctccaccataacggacctcatgacgcgcatgtcttcagccacc
atatccacatccaatctcgtgaacaacctgacttcccgcatcgtcaaatcggagatacgg
accagtatagtcagcatatcctcgtccaggattgagaagaagcgtgacacttcgaacatg
tctctcagcacgttgtcggttaacagtgagacctcggtatcggataagagttcgagtcag
gatgtgaactcggagaatgttacggagagacgcgtcagcccgccgcccgtgaagacggtg
tcgaccggcgctatacctaagagcatcagcttcgatgctacggcggagaagagtcagagg
cggcgtacgggcggcgacgacggtatcgccggcaacctggacgagctgaagaacaacgtg
aaacgttccggcggcaacttgctgcacaagataaagatgtttcggcagaagggacgcgcg
caccaccccaacgacataaagttgtccgaggaggaggcccgcagcgacgacgggtcgcgg
acggagcccgcgcccgcggagtcctcggacgacatcctggccaagtaccggcggaagagc
tcgacggactccagccggcagcggcgcgcccagcgacgcgtctccgacgtgcccgacgcg
gagcttgacagagtcgagggcgtgctggacctgaacgacccggaagtgttcaacagcatg
aagaagaaacttcggctcgtgctgtccaacccggatctgctttgcctggaatacgtacct
aaccgttgcacgagcacgtccctggtggagtgggtgcgggcggcgggcgcgtcggccgcg
tcggaggcgggcgccgcccacgccggcgaggtcgcccgcgccctggcggcggcgggcgcg
cggggcgagctgctcgcggccgcgctgcgggccgacctcgccgcgagacgaccgtacgcg
aagtatttggcgtcctgccgggctgcgctcacgcatatgctgcacgcgttgagacggcaa
atcagccaggtgcgcggcgagtgcgccgcgtgcgcgcagacggcggccgcggcgcgcgcg
cagcaacagctggagcgcggcggcgcgctgcggcggctggcgcggcaccacgcggccgcg
cacgcgccgcccggaggcgagctcgtcgacgaaaaggcgaggcggcttatggccaacatt
aaaacaatgacggcggacgtgaaaaatgacccgtcgtgggaaggcgcgtcggcggcgcag
ctggaagcgctggagacggcggtggagcgcgccgcgttcgcgcgcctctacctccacgtg
ctgttccccaacggggacggggacattgcgcgcgaccaggtcctggcggagcacatccgg
cggctggcagcgggcatgagcgcggcgcgcgcgggcgtcggcgcgcgccacctctgggcg
gcgcccttcccgcgcgcgcagctgctgctcgcccacctgcccgtctaccgcacgccgcgc
gacaaggtgcagtgcgtgatgcgttgcgtgacttgcgtgatggccgtgctcgggctgacg
gagggctccgcgccctccgccgacgacctcacccccgtgctcgtctatatcatactcaag
gtgaacccgccgtcgctcctctcgaccattgagttcgtgaacacgctgggcggcgccgcg
ctccagggcccggcgctctattggtggacgcagttctgcgcggccgtcgcctacatcaag
actatggattacccgcgacacgactcctag
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