Choristoneura fumiferana (eastern spruce budworm): 141441243
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Entry
141441243 CDS
T11020
Symbol
Prp5
Name
(RefSeq) pre-mRNA processing factor 5
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141441243 (Prp5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141441243 (Prp5)
Enzymes [BR:
cfum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
141441243 (Prp5)
Spliceosome [BR:
cfum03041
]
Complex A
U2 snRNP components
U2 related factors
141441243 (Prp5)
Complex B
141441243 (Prp5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
CdAMP_rec
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
141441243
NCBI-ProteinID:
XP_073962013
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All DBs
Position
23:12723234..12739591
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AA seq
813 aa
AA seq
DB search
MQKRRDRIERWRADRKRKELESAKKEVQKGSLVSNIQMPAKKWSLEDDSGDEAEEAEAKE
KAAAEEKKEAEDEIDPLDAYMQEVQQEVRKVNQMDQQRGLTVPTNGGTGIVILTGTAKKK
VSEQKNKGELIEQNQDGLEYSSEEENEDIKDTAANLASKQRKELAKVDHSSLEYMPFRKA
FYTEVSELARMSPEEVEAYRTELEGIRVKGKGCPKPIRTWAHCGVSKKEMDILKKLNFEK
PTPIQAQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHVLDQSPLEDTDGPISLIMTPT
RELCMQIGKDIRKFAKSLGLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANS
GRVTNLRRVSYIVLDEADRMFDMGFEPQVMKIIDNIRPDRQTVMFSATFPRQMEALARRI
LQKPIEIQVGGRSVVCKDVEQHVAILEDDAKFFKLLELLGLYSQLGSIIVFVDKQENADS
LLKDLMKASYSCMSLHGGIDQFDRDSTIVDFKNGKVKLLVATSVAARGLDVKQLVLVVNY
DCPNHYEDYVHRCGRTGRAGNKGFAWTFLTPEQGRYAGDVLRAMELSGAVVPPTLRALWD
SYKDAQEKDGKKVHTGGGFSGKGFKFDESEAQAATEKKKYQKAALGLQDSDDEDVEGDLD
QQIETMLAAKKIVKEIKAKTVAEQLAAKLNTRLNYQPRDESANEPAEEVFRKYETELEIN
DFPQQARWRVTSKEALALISEYSEAGITVRGTYVPPGKNPPEGERKLYLAIESSQELAVA
KAKSEITRLIKEELLKLQTSAHHMVNKARYKVL
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgcagaaacggcgtgatcgtatcgagcggtggagagccgaccggaaacggaaagaactc
gagtcagccaaaaaagaagtacagaagggcagtctcgttagcaacatacagatgcctgct
aagaagtggtcgctagaggatgactcaggcgatgaagctgaggaggcagaagctaaagaa
aaagcagctgcagaggaaaaaaaagaagcggaagacgaaattgatccattggatgcctat
atgcaagaggttcagcaagaagtgcgcaaagtgaatcaaatggaccagcaaaggggtcta
actgtgcccaccaatggtgggactggtatagttattttgacgggcacagccaagaagaag
gtctcagaacagaaaaataaaggtgaactgatagaacagaaccaggatggcctggagtat
tcttccgaagaagaaaacgaagacattaaagacacggcagcgaatctcgcgtcgaagcaa
aggaaagaactggctaaagtagaccactccagcttggaatacatgccgttccggaaagct
ttttacacagaggtgagtgagctagctcgaatgtccccagaagaagtggaagcgtatcgc
acagagttagaaggtatccgcgtgaaagggaaaggctgccccaagccgataaggacgtgg
gctcactgcggcgtcagcaagaaagagatggatatactgaagaagctcaactttgaaaag
cctacgcctatacaggctcaggcgataccggctatcatgtcgggaagggacctaataggc
atagcgaagaccggctctggcaaaaccctcgccttcatcttaccaatgttccggcacgtt
ctggaccagtctcccctcgaagacacggacggccccatctccctcattatgacacccacc
agggaactgtgcatgcagattgggaaagatataaggaagtttgccaagtccttggggctg
agggtcgtgtgtgtatacggtggcactggcatctctgaacagatagcggagctgaaacgt
ggcgctgagataatagtgtgcacgccgggtcgtatgatcgacatgttagcggctaattcc
ggtcgcgttacgaacctgcgtcgggtgtcgtacatcgtgcttgacgaggctgaccgcatg
tttgacatgggctttgagccacaggtaatgaagataatcgacaacatccgccctgaccga
cagaccgtgatgttcagcgcgacttttccacgccagatggaggcgctggctcgaaggata
cttcagaagcccatcgagatacaggtgggcggacgaagcgtagtctgcaaggacgtggaa
caacacgtagccatcttggaggatgacgccaagttcttcaagctgctggaactcctgggg
ctgtacagtcagttgggcagcatcatcgtgttcgtggacaagcaggaaaacgcggacagt
ctgctcaaagatttgatgaaggcttcatattcctgcatgagcttacatggagggattgat
caattcgacagggactccaccattgttgatttcaagaacggcaaagtgaagctcctggta
gcgactagtgtggcggcgcgcgggctggacgtcaaacaactggtgctggtagtcaactat
gactgccctaaccattatgaggactacgtgcatagatgcgggcgcaccggcagagcaggc
aacaaaggtttcgcctggacgttcctaaccccggaacaaggccggtacgcgggtgacgtg
ctacgtgctatggagctgagcggcgcagtcgtgccgcccaccctacgcgccttgtgggat
tcgtacaaggacgcgcaagaaaaggatggcaagaaggttcatacaggaggtggatttagc
ggaaagggtttcaagttcgacgaatcagaagcgcaagcggcgaccgagaagaagaagtac
cagaaggcagcgctcgggctccaagactctgacgacgaggacgtcgaaggcgacctcgac
cagcagatagaaaccatgctggctgctaagaagatcgtcaaagagatcaaggctaagacg
gtagcagagcagctggccgccaaattaaacacgcgtctcaattaccagccgcgcgacgaa
agtgccaacgagcccgctgaagaagtgtttaggaagtacgagacggaactggagatcaat
gacttcccgcagcaggcgcgctggcgagtcactagcaaggaggctctggccctgatcagc
gaatactccgaagcaggcatcacagtccgcggcacgtacgtccccccaggcaagaacccg
cccgaaggggaacggaagctgtacctggccatagaaagctcccaggaactcgccgtggcc
aaagccaagtcggagatcacgcgtctgatcaaggaagaattgctgaaactgcagacctct
gcccatcacatggtcaacaaggctagatataaggtcttgtag
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