Choristoneura fumiferana (eastern spruce budworm): 141441856
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Entry
141441856 CDS
T11020
Symbol
DNAlig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03030
DNA replication
cfum03410
Base excision repair
cfum03420
Nucleotide excision repair
cfum03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
141441856 (DNAlig1)
03410 Base excision repair
141441856 (DNAlig1)
03420 Nucleotide excision repair
141441856 (DNAlig1)
03430 Mismatch repair
141441856 (DNAlig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cfum03032
]
141441856 (DNAlig1)
03400 DNA repair and recombination proteins [BR:
cfum03400
]
141441856 (DNAlig1)
Enzymes [BR:
cfum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
141441856 (DNAlig1)
6.5.1.6 DNA ligase (ATP or NAD+)
141441856 (DNAlig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
141441856 (DNAlig1)
DNA replication proteins [BR:
cfum03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
141441856 (DNAlig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
141441856 (DNAlig1)
DNA repair and recombination proteins [BR:
cfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
141441856 (DNAlig1)
NER (nucleotide excision repair)
Other NER factors
141441856 (DNAlig1)
MMR (mismatch excision repair)
Other MMR factors
141441856 (DNAlig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
141441856
NCBI-ProteinID:
XP_073962847
LinkDB
All DBs
Position
24:122224..140607
Genome browser
AA seq
943 aa
AA seq
DB search
MNCLNKLLRPCKLIVFSVNKVVSVAASSRTSGDHISVFSFHFNVFQVRNMAQKSITSFFK
ITPKKSPEIKKETTENDNSFDDIETKPPSPVQNDTKRSSKRQRLDSDSSESQSPKKEPPP
SLTKKKVKRQRIESSESEVEPAKSPLTSAVKSEKETPVKSPVGSPRTSEQSLVESPVKTE
IKLEKSDSVKTYSSPKSKKAKKDLKTDNAGKKTAKKSSSTKSIKKEETKPKENDNAAKKT
AKKNSSTESIKKETPPKENGKESSKSYVEKKEVGVKKEDGGIVPETEYDPSKSKYHPIND
ACWRANQPVPYLALAKTLEAIEAISARLKIVEILSNYFRSVMVLTPEDLLPSVYLCLNQL
APAYHSLELGIAETYLMKAIGQCTGRTLAQMKAAAQKTGDLGAVAEQARSTQRTMFTPPP
LKTRAVFNALKDIASMTGQASVNKKIGKIQSLYVACRFSESRYLIRSLEGKLRIGLAEQS
VLQALAQAAAATPPGGGVLDATKGLSAAEFKAKVDEQALIIKTTYCECPNYELIIPVMLE
HGVAALPEHCKLTPGIPLKPMLAHPTKGVHEVLNRFEGTRFTCEYKYDGERAQIHVPKAD
GEGPDLPNASVFSRNQENNTSKYPDILQRLPSLLKSEVSSCVLDCEAVAYDIANKQILPF
QILSTRKRKDAAASEIKVQVCVFVFDVLYLNGRALVREPLEERRRLLRENFNEVEGSWQF
AVAKDCSSMEEVQQFLEDAVRGSCEGLMVKTLEGEHARYDIARRSHNWLKLKKDYLEGVG
DTIDVVVIGGYHGRGKRRGVYGGFLLACYDAAGDEYQALCKIGTGFSDEDLQTLTKTLEE
HVIETPRNYYRYDNAHAPDAWFAPACVWEVRCADLSLSPAHRAALGLIDPERGVSLRFPR
FIRVREDKTPEQATSAQQIAEMYLSQDQVKNQTSKPVNFDDFY
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgaattgtcttaataaactgcttagaccttgcaaattaattgtatttagtgtaaataaa
gtagtttccgttgccgcatcttcaagaacaagtggtgatcatataagtgtgttttctttt
cattttaatgtttttcaagtaagaaacatggctcagaaaagcattacatccttcttcaaa
atcactccaaagaaaagtccagaaataaaaaaggaaaccactgaaaatgacaattccttt
gatgatattgagacaaaaccaccatcacccgttcagaatgacacaaagagatcttcaaaa
agacagaggttagacagtgatagcagcgagtctcagtcaccaaagaaagagcctccacct
tccttaacaaaaaagaaagtaaaaaggcaacgaatagagagctcagagagtgaagtagaa
cctgcaaaatcaccattaacttcagcagtgaaatcagaaaaagaaacaccagtaaagtcg
ccagtcggttcaccaagaacatcagagcagtcattagtggagtctccggtaaagactgaa
attaaactggaaaagagtgacagtgtgaagacatatagttcacccaagagtaagaaagcg
aagaaggatttgaagacagataatgctggcaaaaaaactgctaagaagagttcaagcact
aaatccataaaaaaagaagagaccaagccaaaagagaatgataatgctgccaagaaaaca
gctaagaagaattctagcactgaatccatcaagaaagagactcctccaaaggagaacggt
aaagagtcaagcaagagttatgtagaaaaaaaagaagttggtgtaaagaaagaagatggt
ggaattgttccagaaacggaatacgacccctctaaatcgaaataccaccctatcaatgac
gcgtgctggagagccaaccagccggtgccgtatctggctctggctaagaccctggaagcc
atcgaagccatatcagcccgcctgaagattgtagagatactcagtaactacttcaggtcc
gtgatggtcctgaccccagaagacctgctgcccagtgtgtacctgtgcctgaaccaatta
gcgccagcttaccacagcttggagctcggcatagcagagacgtacctgatgaaggcgatc
gggcagtgcaccggccgtacgttagcgcaaatgaaggcggctgcgcagaagacaggcgat
ttaggcgcagtagcggagcaagcgcgctccacgcaacgcacgatgtttacgccgccgccg
ctcaagacaagggccgtgttcaacgcgctcaaagacatcgctagcatgacgggccaagca
tctgtgaacaagaaaatcggcaaaatacagtcactgtatgttgcctgtcgcttctccgaa
tctcgatatctaatacgttcactggaaggcaagctacgcattggacttgcagagcaatca
gtgctacaggcgctggcacaggctgcggccgccacgccgcccggcgggggcgtgctcgac
gctaccaaggggctctccgctgccgagttcaaggctaaagtagacgagcaagcgctcata
atcaaaaccacgtactgcgaatgccccaactacgagctgataatccctgtgatgctggag
cacggggtggcggccctcccggaacactgcaagctgacgcccgggatcccgctcaagccc
atgctggcgcatcccaccaagggggtccatgaggtccttaaccgtttcgaaggcactcgg
ttcacctgtgaatacaaatacgacggcgagcgcgctcagatccacgtgccgaaggccgac
ggcgagggccctgatctacccaatgcgtccgtgttcagcaggaaccaggagaataatact
agcaaatacccagacatcctgcagcggttaccgtctctactcaagagcgaagtgtcgagt
tgtgtgttagactgcgaagcggtcgcgtacgatattgccaacaagcaaatactgcctttc
cagatcctgtcgacgcgcaagcgcaaagacgccgccgcgtcggagatcaaagtgcaggtg
tgcgtgtttgtgttcgacgtgctgtacctgaacgggcgcgcgctggtgcgggagcccctg
gaggagcgccggcggctcttgagggagaacttcaacgaagtcgaaggctcatggcagttc
gcggtggccaaagactgcagctccatggaggaggtgcagcagtttttggaggacgccgtg
cgcggcagctgcgaggggctcatggtcaagacgttagagggagaacacgcgcggtacgac
atcgcgagacgcagccacaactggctgaagctaaaaaaagactacctagaaggcgtgggg
gacacaatagacgtggtggttatcggcgggtaccacgggcggggcaagcggcgcggcgtg
tacggcgggttcttactcgcctgctacgacgccgctggcgacgagtaccaagcgctctgt
aagatcgggaccggcttctccgatgaggatctgcagacgttgacgaagactctagaagag
catgttattgagacgccgaggaattattacagatacgacaacgcgcacgcgccggacgcg
tggttcgcgccggcgtgcgtgtgggaggtgcgctgcgcggacctgtcgctgtcgccggcg
caccgcgcggccctggggctcatcgaccccgagcgaggggtctcgctcaggttccccaga
tttatccgcgtccgcgaagacaagactccagagcaggcgacgtctgcgcagcagatcgcg
gagatgtatctgtcgcaagaccaggtcaagaaccaaaccagcaagcctgtcaacttcgac
gacttctactaa
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