Choristoneura fumiferana (eastern spruce budworm): 141442407
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Entry
141442407 CDS
T11020
Symbol
htt
Name
(RefSeq) LOW QUALITY PROTEIN: huntingtin
KO
K04533
huntingtin
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfum03019
]
141442407 (htt)
04131 Membrane trafficking [BR:
cfum04131
]
141442407 (htt)
03029 Mitochondrial biogenesis [BR:
cfum03029
]
141442407 (htt)
Messenger RNA biogenesis [BR:
cfum03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
141442407 (htt)
Membrane trafficking [BR:
cfum04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
141442407 (htt)
Mitochondrial biogenesis [BR:
cfum03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
141442407 (htt)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
Htt_C-HEAT
HEAT
HEAT_2
Plus-3
DUF6415
Motif
Other DBs
NCBI-GeneID:
141442407
NCBI-ProteinID:
XP_073963485
LinkDB
All DBs
Position
25:12807876..12894128
Genome browser
AA seq
3084 aa
AA seq
DB search
MNVLEKAEKALEYLKSVEGSAKSHELQSAAGTLGRCLGALGSRQNCARHYANLLHSSIPT
LLALASNESAEIRLVGDEALNRAVVGGFAFHSHKTNIILQNQIDQTKNARWIRAALTRIC
LGECWLRPGVGKIRTQAQMLFPKLSQIVRKTTEIQLTLEALENNLDRVLTALAEYTTDEE
IAELSKALLGHVESPEPAVRRAAAACVAHVCAHRDTALPDVCNAVFQKLWPSTTDNTVIM
AWFCVVKALFHTNDVSKFAENEVFTVHDYLEFYYLCIHYIERTTTEHNIQNAVLECLTTL
LSQARGEYRKALLERHPKKVCLDNREEKRHRRNISASSISSRATMGPVSERESELLFSGA
LQLQTPSLSVEDLTIHTPDSPASEMDMEVNPEQLSTELLSYHKELADKLREIEDSDHKED
QVDAVFEGGVKVNIGTTADDDIPLKYCARLLASKFLLTANKGGLISDRVTRVSVKSSALN
CMSEILQIYPQAITVYLDKDADIKPHNISGSSEGTDYNQDHINDFILERNVCYQDSLTDS
LTQELLNRSIDSQSQSHQISKKDSKSLEKSMDSVEQKSSSKDVQSNILDSKVFPKNELIA
SGMTDSTNPNMTNSNFTTNSNMTCSNDPTTGYPMSSSGGVLSSSIDLDMKFDHFGESTTN
LDNLDAFKKDKAKRPLKRTDEVHSKDAPELMDVSADKELDTDFEFQHMSDIFVLLEGHND
PQIRGLVRVCIGNYLSAALELSHGDYNRWRNVSALPKDVSDNISSEKLVKIILKGLTDEI
HSTVNHTLNALTKTALAISEGAPWPLLWECINALVDXGIHMCRSNLCRLYDQAAYQKIFI
LFPGFHAKSKTISDTLFRLLADQDQRVREAAALTIANIIPKIFIPKSHKPTTMLAELAKE
HSELFNFDHKGLSLDLVRNMYFYCDLPEELRSGTCLKDDGGLRIVIGDIMCRLLASDCKY
YSQGLLESLQAICKKWLPWKHKAAYSGQGVLSYCLDQLDYCNGSVAVRTLLLDICRLVYP
VEIHNIMCHKTGQDIFERDSQTAKDKWQHLENERVASLAEKFLQVTLKMLNVLVHLIEDV
NPNVHLNKSGIALPGSPVRRKTQESQSRKSSISEADDRGSLRKKLPVPATSLRANFAGHF
FNEPFYMKLYDNLRATYSNHKINLDPKSSLFHDFLSTTLNALAIQLELCTEREVGTVTEE
LLYYLKVIMPLRSDTTVYCITQLLKCLFGTNMITEYSDFMTIDDPPLEKKKGSFYESVML
INSLSPIESESRRDSVSSNASQKMAFDSMNERMAEERKMLIAMENFSKNKMDRKWSTNKK
ELERYIRLFEPVVILALKSYTMQNDIPLQCRVLSLLSQLLTLRVNYCMLDSEQIFIAFLI
KQLEYVEQHEIPNCCDLVNSILMFLVHLSSSKHHTKQIIDIPKLIQLCDGLMASGAHLEC
IAGLEPVAVKVFSNMGGSSVLGRQQQQEAQATREVLFYMLQKTMHQHKVLELVSCLLCLS
RGTPESYYRWSELASDTLLNLLAQASTELCSRRAVSSLERLLDSVYKDVLLEQSRVEILL
KILFKAPPDLATTPPKLRLRYLTIVMVLLRKVLVLIPESEILLSINYLKSSYVSPQSIFF
NVKPDVDPLNVQNINENCANLSPDVILVRFLFKTLTFAITEVDNCHDTILDYNDSEDKSQ
NGLLYSVCVNIIVQVKHMLHLTPGCLFPLTAKTAQSILHNEQSGLNTGLYSPEENIPLDL
LNLICLRAAHRTPLLTVHWSHLLIRLNFLSHKYWQKLLGFARDLPLGSGDSRPSPACALQ
TACVVAYCEYFVENGLSEAVHLTWLLVNRIHILANQYSEDIVQSLVAKVQENAGASGLLL
QAVAARCQGCLQDEFALNIYKILSLCHEGQSGALVFLICRIIGKLEPAVAVRFAKLAIER
CRILRDMPVESINVQLTKEDVQVALEMLQREKVHVRYPALVMELNALASSVFDLSPLDLS
QDRAVNPQYITTTNVDDQWLVNQIKNRCCQTNCTLPKVPKQKELANLLMNLSKEELTNVM
SCPEFDRKILSSFFKVACDNYLREFLNVVSICEIKELEKDNIREQKEMIKLHEEMTYSMD
SNKLNVVNSLQVFKNKDKESKSQFFIPVDEREKFGNLELSDDDTELVPPPVSELYEVAVT
SLHKSLTEIIRLFPKQNRPLSQSENFNLTVEQTIDKYTRRCHQVFQDKLFYQEFLTIQTI
LKGFLDSVQRTLKLIDDTDCDLLEKCLETILPSSLAKSIAIFSVISLQYLTFLIKNKKLV
ESPVNTDVSFRANVTVTDDVVVDSVIVLTVDNVAEALSCKEIWTGLNFDSNVNRTQSAIS
CLYAIVKYLVKDTKPITLKKYIHTLEETKPDIIIVGDKLVTLIEYWESNFYTNGESEVLG
KCYRKPIEKLLISLARLDMVSDMALIPPIAWGSVEVVLKKDQLQKIDLPLQALQDMDVLE
AFLFRVNLIGWSSKKQFEEIWVGLLGALQGNGGHWAVRGITQLLVATRSARHVPRHLCPT
SVGIQRLRNILVGTSFYCQLDDINLERIPLLKDGYQGYHAAEYSSDYLKLAAEIVNHAPY
FARKEVRRTRKNKEIDVNSCLQLLMDVTSQMLDPKAPTGLACRVSLLTSLTYCSDVYTDA
GQWRAGAAQLIALSGARHAVAQYTTAGRALLAAMQRALCVERHDTLELPTIHQKLLKSLS
SSYAPLRQAALQGCLLQLGGARKVQATGYQELVAQLDQHVRQHLLPGARISLYEQSLYWA
VLFTLIELGHPDLINLAVDFVLTRPRHYCIDLVVKGIANTIRQQVLPKELKNNVIEKLTD
NTKRYSERHALQILMVHLFSADSKLLSPKLTSDVSNMDPDILMNSMERITLLYKLLRKSK
QSETKQIITDALKYFLRETLPPAATLSRVVIEFLETCKDSERQKMAVISERERAIESGVL
NAEVVFEVFETSITQDQLPVLSGWIFEALCHLLQGKISSNLLPYALLTLLVSASAHKHIR
RIVPLCYYILKLGFYRCSQIDNWGVFKDFVGTLDVKMSFTDRRLLCIVAKHSGFSKGQLE
RLKELCSENACLGDVAQCLDVETG
NT seq
9255 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtgctagaaaaggccgagaaggccttggaatacttgaaatccgtcgaaggttct
gcgaagagccacgagcttcagtcagcggctggaacattgggtcggtgtctaggtgcactg
ggaagtcggcaaaactgcgccagacattatgctaatcttctgcactcttctataccgaca
ctactagctttggcgagcaatgaaagcgctgaaattcgactagtgggtgatgaagctttg
aaccgagcagtagttggaggctttgcgtttcattcccacaaaactaatataattttgcaa
aatcaaatcgatcaaacgaaaaacgcaagatggattcgcgcagccttaacccgcatttgt
ctgggagaatgctggctccgtcccggagtgggcaagattcgtacgcaagcacagatgctg
ttcccgaaactcagtcagatagtgcggaagacaactgaaatacaactgacattggaagct
ctggagaacaatttggaccgagtgctgactgccctagcggagtatacgactgatgaagag
attgctgagctgtcaaaagccctgttgggtcatgtggagagtcccgagccggcggtgagg
cgcgcggcggccgcttgcgtcgcacacgtgtgcgcgcaccgcgacaccgcgctgcctgac
gtctgcaacgctgtgttccagaagctatggccgtcgacgacggacaacacggtgataatg
gcgtggttttgcgtcgtcaaagccttgttccataccaacgacgtctccaaattcgccgag
aacgaagtgtttactgtccacgactatctagagttttactacctatgtattcactacata
gaacgaacgacgactgagcacaacatacaaaacgccgtgctcgaatgtctgactaccctc
ctatcgcaagctaggggtgaatacaggaaggcgttgctcgaaagacatccaaagaaagtg
tgcttggataacagagaagagaaaaggcatagaagaaatatcagtgcatcgagtatatcg
tcccgcgccacgatggggccggtgtcggagcgcgagtcggaactactgttcagcggagcc
ctgcagctccagacgccgagcttgagcgtcgaagacctcacaatacacactccagactct
ccagccagtgaaatggacatggaagtgaacccggaacagttgtccacggagctgctgagc
taccacaaagagctggctgacaagctgagggaaatagaggactcggaccacaaggaagac
caggttgatgcggtgtttgaaggtggagtcaaggtcaacattggaacgacagcagacgac
gatattccactaaaatactgcgcgaggttgctcgcttctaagttcctactgactgcaaac
aaaggaggtcttatatctgacagggtgaccagagtgtctgttaagtcatcagcgttgaac
tgtatgtccgaaatactgcaaatttacccacaagccatcactgtgtatttggataaagat
gcggatattaaaccacataatatatcaggatcatccgaaggcactgactataaccaagat
cacataaacgatttcatactagaacggaacgtgtgctaccaagactctttaacagactct
ctaacacaagaactcctaaaccgaagcatagacagtcaatcccaatcccatcagatatca
aaaaaagatagcaaatctttagagaaatcaatggacagcgtcgaacaaaaaagttcatcg
aaagatgtccaaagcaacatattggatagcaaagtgttcccaaaaaatgagctaatagcc
agtggtatgacagatagcactaatcctaacatgactaatagtaattttactactaattcc
aacatgacttgtagtaatgaccccactacgggttatcctatgtcgagcagtggcggcgtt
ttgtcatcaagtatagatttagacatgaaatttgatcatttcggcgaatccacgacaaat
ttagataacctagacgcctttaaaaaggacaaagctaaacgtcctttaaaaagaacggat
gaagttcacagtaaggatgcaccggagttgatggacgttagtgctgataaagaattggat
acggatttcgagttccagcacatgtcggatatttttgtgcttttggaaggacataatgac
cctcaaataagggggttggtgagagtatgtattgggaattatttgagtgccgcgttggag
ttgtctcatggtgattataatagatggaggaatgtcagtgcgctcccaaaagatgtcagt
gataatattagttccgagaagttggtgaaaatcattttgaagggtctaaccgacgaaata
cactcgacagtaaaccacacccttaacgctctaacgaagacagcgctagccataagcgaa
ggcgcgccatggcccttgctatgggagtgcataaacgcgttagtggattagggcatacac
atgtgtcgctcaaatctatgcaggttatacgaccaagctgcttatcagaagatatttata
ttattcccaggattccacgctaaaagcaagacaatatcggacaccctgtttcgcctctta
gctgatcaagatcaaagagttagggaggctgccgcgctaaccattgccaacataatacca
aaaatattcataccaaaaagccacaagcccaccacaatgctcgctgaactagcgaaagaa
cacagcgaactgttcaacttcgaccacaaaggcctttccttagacctcgtcaggaacatg
tacttttattgcgaccttcctgaagaacttcgaagtgggacctgtttgaaggacgacggt
ggtttgaggatcgtaattggtgatataatgtgcaggctgctggcttccgattgtaaatat
tactcgcaaggacttctagagagcctccaagctatatgcaagaagtggttgccatggaaa
cacaaagctgcatactcgggccaaggagtcttgagctattgcctggaccagctggactat
tgcaacggcagcgtagcggtgaggacgctgcttcttgatatttgcaggcttgtttatcca
gtggagatccacaatataatgtgccataagacgggccaagacatattcgagcgtgattcc
caaacagccaaagacaagtggcaacacttggagaacgagagggttgccagcttggcggaa
aagttcttgcaggtcacgttgaaaatgttgaatgtgctggtccacttgatagaggatgtt
aacccgaatgtgcatttgaataagagcggtatcgcgctgcctgggagtcctgttaggagg
aaaactcaagagtcccaatctcgtaaaagtagtatatcagaggcggacgaccgcggctcg
ctccgcaagaaactgcccgtgccagcgacgagtttgcgagctaacttcgctgggcatttc
tttaatgaacccttttatatgaagctgtatgataatctgagggccacgtactcaaatcat
aagattaacctggacccaaaaagcagtttgttccacgacttcctttcaacaactctaaac
gctctcgcgatacagctcgagttatgcacagagcgcgaagttggcactgtaacagaagaa
cttttatactacctcaaagtcataatgcctttgcgctcggacacaaccgtgtattgcatc
acacagctcttaaaatgcttattcggcactaacatgataaccgagtacagcgacttcatg
accatcgatgaccctccactggaaaaaaagaagggttcgttctatgaaagcgttatgttg
ataaattctctcagtcctattgagagtgagtctagaagagacagcgttagttcgaacgct
agccagaagatggcgtttgattcaatgaatgaaagaatggcggaggagagaaagatgctg
atcgctatggagaatttttcgaagaataaaatggataggaagtggagtacgaataagaag
gagttggagaggtatataaggttgtttgagcccgttgttatactggctttaaagagctat
acaatgcagaacgacattcctctacaatgccgcgtgctcagcctgctgagtcagctgtta
accctccgagtgaactactgtatgctggacagcgaacagatcttcatagcattcctcatc
aagcagctggagtatgtggaacagcatgaaattccaaattgctgcgatctcgttaacagt
attcttatgtttttggtgcatctgtcttcttccaaacatcatacgaaacaaataattgac
attccaaagcttatacaactgtgcgacggacttatggcttcgggggcccacttggaatgc
atagctggtttggagcccgttgcggtcaaagtattcagcaatatgggaggtagcagtgta
ctagggcgtcagcagcagcaagaagctcaagccacgcgggaagtcctgttctacatgctc
cagaaaaccatgcatcagcataaggtgcttgagctagtatcctgcttgctctgtctttcc
cgtggcacccctgagagctactaccgctggtccgagctggcgagcgacactctcctcaat
ctcctggcccaggcctccactgaactgtgctcgcgacgagctgtctccagcttggagagg
ctgttggattctgtgtacaaagacgtgctcttggaacagagtagggtggagatactgttg
aagatattgttcaaagcgccgcctgatttggctacgaccccaccgaagctaagactccgc
tacctcactatagtaatggtgctactccgcaaagtgcttgttctaataccggagagcgaa
atacttctctcaatcaactacctcaaatcatcctacgtttcgccgcagtcgatattcttt
aacgtgaagccagatgttgatccattgaacgtccaaaatatcaatgagaattgtgctaat
ttgtcaccagatgtcattttggtcaggtttttgttcaaaactttgacgtttgccatcacc
gaggtggacaactgtcatgataccattttggactataatgatagtgaagataaaagccag
aatgggttgctgtattctgtgtgtgttaatatcattgtgcaagtgaagcacatgctgcat
ttgacgcctggctgcctcttccctctaacagcgaagacggctcaaagcatccttcacaac
gagcaaagtggtttaaacacgggcttgtacagtcccgaagagaatatccccttggatctc
ctcaacctgatatgcttacgggcagcgcataggacgccgttgctgactgtacattggtcg
catttacttataaggttaaacttcttgtcgcacaaatactggcagaagctgcttggcttc
gcccgcgacttgcctctgggcagcggcgactcgcgcccctcgccggcctgcgcgctacaa
acagcctgcgtcgttgcttattgcgaatacttcgtagagaacggtctctcagaagcggtc
cacctgacctggttgttggtgaaccggattcatatattagcgaatcagtactcggaggat
atagtgcagagcttggttgccaaagtgcaggagaacgcaggcgcttcagggttgttactg
caagccgtggcggccaggtgccagggttgtctgcaggacgaattcgctctgaacatttac
aagatactgtctctctgccatgagggtcagtctggtgctttggtgttccttatctgccgg
attattggcaagttggaaccggctgttgcagtccgttttgcaaagttagccatcgaacgg
tgcagaatattaagagacatgccagtggagagtatcaacgtgcaacttaccaaagaagat
gtgcaagtagcgttggagatgctgcaaagggagaaggttcacgttcgataccccgcgcta
gtgatggaactgaacgccctagcgtcgtcggtgttcgatctgtcccccctagacctgtcc
caggatcgcgccgtcaacccccagtacatcactacgaccaacgtggacgaccagtggctt
gtcaaccagattaaaaacagatgttgtcagaccaactgtacgttgcccaaagtaccaaag
cagaaagagctcgccaatctactcatgaacctgtctaaagaagaacttactaatgtcatg
tcatgtcctgaatttgacaggaaaatactaagctccttcttcaaagtcgcctgtgataat
tatctaagagaattcctaaacgtagtttctatttgtgaaatcaaagaactagagaaagac
aatataagagagcagaaagagatgatcaagttacacgaagaaatgacgtattccatggac
agcaataaattgaatgtggttaacagtcttcaggtcttcaaaaacaaagacaaagaatcg
aaatcacaatttttcataccagttgatgagagagaaaaatttgggaatctagaattgtct
gatgatgatactgaattggtaccgcctcctgtctctgagttgtacgaagtggctgtaacg
agtctgcataagagtttgacggaaataattagattattccctaaacaaaatagaccgctg
agtcaatcagaaaacttcaatcttactgtggaacaaactatagataaatacacaaggagg
tgccaccaagtgtttcaagataaattgttctatcaagaattcctaaccatccaaacaatt
ttgaaaggtttcttggattcagtgcaaaggactttgaaacttattgacgatacagattgt
gatttgctcgagaagtgtttagaaactatacttccttcttctttagctaagagtattgcc
atattttctgtgatctcgctgcagtatttgacgtttttgattaagaacaaaaagttggtt
gaaagtcctgttaatacggatgtatcgtttagggccaacgtgacagttacagatgacgtt
gttgtggacagtgtcatagttttgacagttgataatgtggccgaagcgttgagctgtaaa
gagatttggacggggctgaattttgacagtaacgtcaatagaacgcagtcagctatcagt
tgcttgtatgccattgtaaaatacctagtcaaggacaccaaaccaataacgctgaagaaa
tacatacatacactagaagaaacaaaaccggacataattatagttggtgacaaactggtc
acactcatagagtactgggaatcgaacttctataccaacggagagagcgaagtgctcggt
aaatgctataggaaaccaattgagaagttacttattagtttagctagacttgacatggta
agcgatatggcccttattccgcccatagcgtgggggtctgtcgaggtggttctgaagaaa
gaccagctgcagaagattgacttgccgctgcaagctttgcaggacatggacgttttagag
gctttcctttttagagtgaacctaataggctggtcgtcgaagaagcagttcgaagagata
tgggtggggctgctgggtgccctgcaggggaacggggggcactgggcggtgcgggggatc
acacagctgctcgtggccaccaggagcgccaggcacgtgccccgccatctgtgccccact
agcgtcgggatacagcgtctccgaaacatactagtggggacgtctttctactgccaactg
gatgacatcaacctggagcggatcccgttgctgaaagatggttaccagggttaccacgct
gctgaatacagttcggactatcttaaattggctgcagagattgtaaatcacgccccatac
ttcgcgaggaaggaagtgcggcgaacgcgaaagaacaaagagattgacgtcaacagttgt
ttgcagttgctgatggatgtgacgtcacaaatgttggatcctaaggctcctaccggcctg
gcgtgccgcgtgtctctcctcacgagcctcacgtactgcagcgacgtgtacacggacgcg
ggccagtggcgcgccggcgccgcccagctgatcgcgctcagcggcgcgcgccacgccgtc
gcgcagtacaccaccgccgggcgcgcgctgctggcggccatgcaacgcgcgctctgcgtc
gagagacatgacacgctggagctcccaacgatccaccagaagctgctcaagtcgctatcc
tcctcatacgcgccgctccgccaggccgccttgcaaggctgtctgctgcagctgggaggc
gcgcggaaggtccaagccaccggctaccaggaactggtcgcccagctggaccaacacgtg
cggcaacacctgttgcctggtgcaagaatatctctatacgagcaaagtttgtactgggcg
gtgctgtttacgctgattgaactgggacacccggaccttatcaacttggccgttgatttc
gtgctcaccagaccacggcactactgtatcgaccttgttgtaaagggtatagcaaataca
atccgccagcaagtactgccaaaggagctaaagaacaacgtgatagaaaaactaaccgac
aatacgaagaggtattcagagcgccatgctcttcaaatactcatggttcatcttttttct
gccgacagcaaactcttaagtccgaagctgacctcggacgtgtcaaacatggacccagac
atcctcatgaactccatggaacgcataaccctcctttacaaacttctccgcaaatcgaag
caatccgaaacaaagcagataattacggacgctctgaaatacttcttgagggaaactctg
ccgccggctgcgactttgagtcgagttgtcatcgagttccttgagacgtgcaaggatagt
gagagacagaagatggctgtcataagcgagagggagagggcgatagagagcggggtgttg
aacgctgaagttgtttttgaggtgttcgaaacttcaattacccaggatcagctgcccgtc
ctaagcggctggatcttcgaagccttatgccacttattacaaggaaagatctcttccaac
ctactcccttacgccttactaaccctcctagtttcagcgagtgcacacaagcacatacgt
agaattgtacctctatgctactacatattaaaactgggcttctatagatgttctcaaata
gataactggggtgttttcaaagattttgttggtactttagatgttaaaatgtccttcact
gatagaaggttgttgtgtatagtggcgaagcattctgggtttagtaaaggccagttggaa
aggttgaaagagttgtgcagtgagaacgcttgcttaggagatgtggcgcagtgcttagat
gtggaaactggctaa
DBGET
integrated database retrieval system
