Choristoneura fumiferana (eastern spruce budworm): 141442424
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Entry
141442424 CDS
T11020
Name
(RefSeq) LOW QUALITY PROTEIN: protein polybromo-1-like
KO
K11757
protein polybromo-1
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
141442424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfum03021
]
141442424
03036 Chromosome and associated proteins [BR:
cfum03036
]
141442424
Transcription machinery [BR:
cfum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
141442424
Chromosome and associated proteins [BR:
cfum03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
141442424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_WDHD1
GTP_EFTU_D2
GATA_AreA
Motif
Other DBs
NCBI-GeneID:
141442424
NCBI-ProteinID:
XP_073963506
LinkDB
All DBs
Position
25:complement(6057246..6086404)
Genome browser
AA seq
1726 aa
AA seq
DB search
MSKRRRASSVASRGADGDDSDDGVDHTPGPPPSARKKKKLDPSEKCQQLYDTIRSFKKED
GTLLCDSFIRAPKRRQEPQYYEVVSQPIDLLRVQQKLKMDSYEDLDELSADIELLVNNAK
AFYKPDSSEYKDAIELWKLYTHTKQALENGEEVKPPRVSRTGSLSRRSDVAEDLSETSTN
NEEDNVFEELFSAVMSANSEGRPLYTAFQFLPSKRRYPDYYGVIDSPIDLKTIAQKIQGG
EYANLNELEKDLLLMVRNACHFNEPGSFIYKDAKTLKKVIQVRKQELEQHSRSGPAKTSE
RIRSKRTSRIGPVPNSGALAIMDPPGSDSDVVKHSEDSESDDEKGDNEDSPQWKLFATVK
NHLGPNGTPMADAFSKLPSRRAYPDYYKEIKNPVSLNQIRNKIRRGNYGTLSEVAGDMNI
MFENAKQYNLPTSRLYKDAVKLQRLMQQRVQELLDIVQSSSSDDESLSSVKNQTQVSTPR
PRGRPRINPLPNTTPSVSTPSAPKPNVPLKKKLHFIAKQLVEFTCSDGRQPMLLFMEKPS
KKLYPEYYNVIDKPIDMITIEANIKNDRYNSVEEMISDFRLMFSNCRQFNEEGSMIYEDA
SMLERVMNEKIKELNTNYEKKAPRKEIKTVKSRQLSPFEQKLRTLYDAIRDYRDPKGNRQ
LALIFMKLPSKAEYPDYYELIKNPIDMEKIAHKLKNSVYNTVNELASDFILMFDNACKYN
EPDSQIYKDALILQRVCLQTKQMLREDDDAVPDVPAAVQELLLNLFTSVYNHQDEEGRCY
SDSMAELPEHDGGGGGGARVRGISLDLVKRRLDRGLYRRLDHFQHDMFAVFERARRLSRT
DSQIFEDSVELQSFFIAHRDQLCANTLVSPALGFTRETVATSVELVKQCKLLQENDEEDD
TRSSTDDSMPSGGAPLSQSKYHKGDFLYIQPDKSNKEPSIVQVVRIWTNSDGVAMIYANV
YFRPHETFHVRTRRFLQQEVFKTESHRNIPLDQVAGACYVMNVKEYFKFRPEGYADKDVY
VCESRYNTKHRMFKKIKVWEGAEKEATLVPRDVPLEPNRTVSVFRERVEKHKDELAELEV
LENVQEKERPDVVMYNPLGTDDENTYYEQYNTVCSGVIKTGDYVYVVTDGGKQLIAQVDT
IWETGDNKCYFRGPFLIFPSEVANIINKPFYKQEVLLTTMHDTSPLVGIVGKCSVLDYDD
YLKCRPTEIAENDVFVCESLYDESNRVARKLKAGLRKFEHTKEVTVDEIYYFPKQLGPPA
LASAQEVQAASSAFTQKPFNPVNIDSMDGSKPQFTNLINTTIGSQDVEMILENSLDDSSL
ASPATPLSIGGNSNPYNPSMSSTQERPTQPATPATGKKKKEQKQKIVTGYILYSSEVRKA
IIANNPDSTFASKEKHSKSEISRIVGNEWRSLPAATKQSWEERAAKCNEETSAKLAEEMR
MLSEHTPMEMTYECAWDTCDYQFEDLNDCMEHCIGDGGNMIGTFIETKKAKLEPGHVQQH
YRGVTGEYPCVWRNCARLRKGQQPFPNLPRLLRHVRDLHINKGNPRPMALHERSRNFIPS
SKKPPPPKTYTNNFRSGVMSPGASMSGMSPLARNTPSPGAGEGXGPPGAARLDPLFVPAP
PKAQRVAHSEAYIRYIEGLHSEQKYITPWEKSLTPMPINPDPAHFNMHKLPAHWMTEEAV
QGYLAQDKTLSETDIQKMDPSAKILKGLCALRDFMMKDALCLSKNL
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaagacgtcgtgcctcgtcggtagccagccgcggggctgacggcgacgatagc
gacgatggagtggaccacactccagggcctccaccatctgcccgtaaaaagaaaaagcta
gatcctagtgaaaagtgtcaacagttgtatgacacaatcaggtccttcaaaaaggaagat
ggcacattgctttgtgactcattcattagagctccgaagaggcgccaagagccacagtat
tatgaagtagtatcgcagcctattgacttattgagggtgcagcagaaactcaagatggac
tcttacgaggacctggatgagctctcagctgacattgagctgctggttaacaatgccaaa
gctttttacaagcctgattcttctgagtacaaggatgccattgaactgtggaaactgtac
acgcatacaaagcaggctttagagaatggtgaagaagtgaaacctccacgagtatctcgc
acgggctcactctcccgaaggtccgatgtggctgaggacttatccgagacctccactaac
aatgaagaggacaatgtgtttgaagaactattcagtgctgtaatgtctgcaaactctgag
gggcgccctctctacacagccttccagtttctcccctccaaacgccgataccctgactat
tatggtgtaatagactcccccatagacctcaagaccatagcccagaagatccaaggcggg
gagtatgctaacctgaacgaattagaaaaggatctgctgctcatggtcaggaatgcttgc
catttcaatgaacctggcagctttatttataaggatgcaaagactttaaaaaaggtgatc
caagtccgcaagcaggagttagagcagcacagccgcagcggtcccgccaagacctctgag
cgtatccgcagcaagcgcacgtcgcgcattgggcctgtacccaacagtggggcgctggcc
atcatggaccccccaggctctgacagcgacgtggtcaagcactctgaagacagcgaaagt
gacgacgagaaaggcgacaacgaagactcgccgcagtggaaactgtttgcaaccgtcaag
aatcacttggggcctaacggtacaccaatggcagacgcgttctcgaagcttccatcacgt
cgcgcctacccggattactacaaggagatcaaaaatccagtctccctgaaccagatccgg
aacaaaatcagacgcggcaactatggcacgctgtcagaagtggccggcgatatgaatatc
atgttcgagaatgccaaacagtataacctgccgacgtcaagactttacaaggacgctgtg
aagttgcaaagattaatgcaacagcgtgtgcaagaacttctcgacatcgtgcaaagctcg
tccagtgacgacgaaagtctatcttccgtgaagaaccaaacgcaagtcagcacgcctaga
ccccgtggtcgcccgcgtatcaacccgctcccgaatacaacaccttccgtcagcaccccg
tcggctcccaaacccaacgtaccgctaaaaaagaagctgcacttcatagcgaaacagctg
gtggagttcacttgctccgacgggcgacagcctatgctgttgtttatggagaaacccagc
aagaaactgtatccggagtactacaatgtgattgacaagcctattgatatgatcactatt
gaggctaatatcaagaacgatcgctacaacagcgtagaagaaatgatatcggacttccgt
ttaatgttctccaactgccgccaattcaacgaggaaggctctatgatatacgaggacgcg
agcatgctcgaacgagttatgaacgagaagattaaagaactaaatactaactacgagaag
aaagcgcctagaaaggaaattaagactgtcaagtcgcggcagctgtcgccgttcgagcaa
aagttgaggacgctttatgatgctataagggattatagggaccctaaaggaaaccgtcaa
ctggctctgatcttcatgaaactaccaagcaaagcggagtaccccgactactacgagcta
atcaaaaaccctatagacatggagaaaatagcccacaaactgaagaacagtgtctacaat
actgtcaatgaactagcttcggattttatactgatgtttgacaacgcttgcaagtacaac
gagcccgattcccagatttataaggacgctttgatattgcaacgcgtgtgcttgcaaact
aaacagatgctgagggaagacgacgatgcagtgccggacgtgccggcagcggttcaagag
ctgttgctgaacctgttcacatcagtatacaatcaccaagacgaggagggcagatgctac
tcggacagcatggcggagctgccggagcacgacggcggcggcggcggcggcgcgcgcgtg
cgcggcatctcgctggacctggtcaagcggcgtctggaccgcggcctctaccgccgcctc
gaccacttccagcacgacatgttcgccgtgttcgagagagcccgtcgcctttcccgcacc
gacagccagatctttgaggactctgtagaactgcagtcgttcttcatagcgcaccgcgac
cagttgtgcgccaacacgctggtgtcgccggcgctgggcttcacccgggagaccgtcgcc
accagcgtcgagctggtcaagcagtgcaagctgctgcaagagaatgacgaggaggacgat
accagatcaagcacggacgactcgatgccgtccggaggggcgcccctatcccagtccaag
taccacaagggcgacttcctgtatatccaacccgacaagagcaacaaagagccgagcatc
gttcaagtcgttcgcatctggacgaacagtgacggcgtcgctatgatctacgcgaacgtg
tatttccgaccgcacgagacgttccacgtgcgcactcgccgcttcctgcaacaagaggta
ttcaaaacggagtcgcatcgcaacatacctctcgaccaggtcgctggagcctgttacgtc
atgaacgttaaagaatacttcaagttccgacctgaaggttacgccgataaggacgtgtat
gtgtgcgagagtcggtacaacacgaagcatcgcatgttcaagaagatcaaggtgtgggag
ggcgccgagaaggaggcaaccctcgtgcctagggacgtgcctctagaacctaataggacg
gtgtccgttttccgtgagcgagtagagaagcataaggacgaactggcggagctggaagtg
cttgaaaatgtacaggagaaggaaagacctgacgtagtgatgtataatccgcttggtacc
gacgatgaaaacacgtactacgaacagtacaacacggtgtgctccggagttatcaagacc
ggcgactacgtttatgtggtgacggacggcggcaagcagctcatagctcaagtggacacc
atttgggagactggcgacaacaagtgctacttccgcggccccttcctcatctttccgtcg
gaagtagctaatatcatcaataagccattctacaagcaagaggtgctgttaacgacgatg
cacgacaccagtccgctcgtcggaatcgtcggcaagtgctcggtgctcgattatgatgat
tatcttaagtgccgtccgacggagatagcggagaacgacgtgttcgtgtgcgagtcgctg
tacgacgagtccaaccgcgtcgcacgcaagctgaaggcgggcctgaggaagtttgagcac
accaaggaggtcaccgtcgatgagatctactacttcccgaagcaactgggcccgccggct
ctggccagcgcgcaagaagtccaggcggcctcctcagccttcacgcagaagcctttcaac
ccagtcaatatcgactctatggatggcagcaagccgcagttcacgaatctcatcaacacc
acgatcggcagccaagacgtcgaaatgatactggagaactcgctagacgactcttcactc
gcctcgcccgccacgccgctctctataggcggcaacagcaacccctacaacccctcgatg
tcgtccacccaggagcggccgacgcagcccgcgaccccggccacggggaagaagaagaaa
gaacagaaacagaagatcgtcaccgggtacatactgtactccagcgaagtacggaaggct
attattgccaacaatcccgattctaccttcgcttccaaggagaaacattccaaaagtgag
atatcccgcatagtgggcaacgagtggcgatccttgccggccgcaaccaaacagagctgg
gaggagcgcgcggccaaatgcaacgaagaaacttcggccaaactcgcggaggagatgcgg
atgctgtcggaacacacgccaatggaaatgacgtatgaatgcgcttgggacacttgcgac
taccagttcgaagatctcaatgattgtatggagcattgtatcggggacggcgggaacatg
atcggaacgttcattgagaccaagaaggcgaaattagaaccggggcacgtgcagcagcac
taccgcggcgtgaccggcgagtacccgtgcgtgtggcgcaactgcgcgcgcctgcgcaaa
ggccagcagccgttccccaacctgccgcgcctgctcagacacgtgcgcgacttgcacatc
aacaagggaaacccgaggcccatggcgctgcacgaacgatccagaaacttcatcccgtca
tcgaaaaaaccgccaccgccgaaaacttacacaaacaacttcagaagtggcgtcatgtct
ccaggagcgtcgatgtcgggcatgtctccgctggcgcgcaacacgccgtcgccgggcgcg
ggcgaggggnggggcccgccgggcgcggcccgcctcgacccgctgttcgtgcccgcgccg
ccgaaggcccagcgcgtcgcacactcggaggcctatatcagatacatcgagggtctccac
tcagagcagaaatacatcacaccctgggaaaagtctcttaccccgatgcccatcaacccg
gaccctgcacacttcaacatgcacaagctgcccgcccactggatgacggaagaagccgtc
caaggctacctagcccaggataagacactctcggagactgacatccagaaaatggatccc
agcgccaagatcctgaaagggctttgcgctctcagagatttcatgatgaaagatgccttg
tgcctttccaagaacctttaa
DBGET
integrated database retrieval system
