Choristoneura fumiferana (eastern spruce budworm): 141442744
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Entry
141442744 CDS
T11020
Symbol
U4-U6-60K
Name
(RefSeq) U4-U6 small nuclear riboprotein factor 60K
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
141442744 (U4-U6-60K)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfum03041
]
141442744 (U4-U6-60K)
Spliceosome [BR:
cfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
141442744 (U4-U6-60K)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
Beta-prop_THOC3
WD40
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
WD40_Gbeta
Beta-prop_WDR36-Utp21_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
PRP4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_Aladin
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_DCAF4
Beta-prop_EML
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
141442744
NCBI-ProteinID:
XP_073963934
LinkDB
All DBs
Position
26:9890156..9901992
Genome browser
AA seq
539 aa
AA seq
DB search
MSDDEDVIFVKRSKQVHYGSLEEQEKARLAALAAAAKEGTEDAGGKELGDIQVSNEYMDL
EEEMSKDKKALLEEFERRRKARQLNVSTDDDEVRRSLRQLGEPVCLFGEGPAERRVRLRD
LLSYLGEDAIHKKLEEEEARIERDRGREGTWYHEGPKELKEARLWIAKYSLPRAKSRLSK
AREELKLAGSVRAASKQESQRKASAMAIYCSQIGDTRPICFCRFSGDSQMLVTASWSGLS
KVWSVPECRELQALKGHTCNVSCATFHPGAVMPQHFRDKLKSKEEGAEDMETEGGSSELV
SEDKSEACTMASCAYDGTVHLWNFVSESPMASLPGHGPSRVSRVEFHPSGRFLAAAVFDS
SWRLWDLETATEVLHQEGHAKEVYSVSFQCDGSLAATGGMDAFGRVWDLRTGRCVMFLEG
HLGGVLGMDWAPAGYQLATAAADHQVKIWDLRKRSSIYTVAAHTHLASDVRYQKSHGHFL
LTTSYDKSGKLWSNPAWHPLRTLSGHDNKVMSGDISFDNKYIATCSYDRTFKLWTPDLA
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgaggatgtaatttttgtcaaaaggagtaaacaggtgcattatgggtcg
cttgaggaacaggagaaggctcgcctggcggctctggctgctgcagctaaggagggcacc
gaagatgcgggagggaaagagctgggtgacattcaagtgtccaatgaatacatggacctc
gaggaggagatgtctaaggataagaaagcactgttggaagagtttgagcgccgacggaaa
gctcgccagctgaatgtgtctactgatgatgatgaggtccgcagaagccttcgtcagctg
ggagagccggtgtgcctcttcggggaggggcccgccgagaggagggtccgtctgagggac
ttgctgagctatctcggagaagacgcaatccacaagaagctagaagaggaggaggcgagg
atagagcgggacagaggccgcgaaggcacctggtaccacgaggggccgaaggagttgaaa
gaggccaggctgtggatcgccaagtactccctccctcgcgctaagagcagactgagcaag
gcccgcgaagagctgaaactggctggcagcgtccgcgccgcctccaagcaggagtcacaa
cggaaggcttctgccatggccatatactgcagccagattggagacacgcggcccatatgc
ttctgccggttcagcggtgacagccagatgctggtcactgctagttggtcgggtctgagt
aaagtatggtcggtcccggagtgccgcgagctgcaggccctcaaaggacacacctgcaac
gtgagctgcgccaccttccaccccggggccgtcatgccgcagcacttcagggacaagctg
aagagtaaagaggagggtgccgaagacatggagacggaaggtggaagctcagagctggtc
agcgaggacaagtctgaggcctgcaccatggcctcttgtgcctatgatgggacggtgcat
ctctggaacttcgtcagcgagtctccgatggcgtccctgccgggccacgggccttcgcgc
gtgtctcgggtggagttccacccgtcgggccggttcctggcggctgcagtcttcgacagc
agctggcggctctgggacttggagacagccacggaggttttacatcaagaggggcacgcc
aaagaagtttacagcgttagcttccaatgcgacggttccctcgcagccacaggtggcatg
gacgcatttggtcgcgtgtgggacctgcgcacggggcgctgcgtgatgttcctggagggc
cacctgggcggcgtgctcggcatggactgggcgcccgccggctaccagctggctactgcc
gccgccgaccaccaggtgaagatatgggatctgcgcaagcggtcgtctatatacacggta
gcggcgcacacgcatctagccagcgacgtgaggtaccagaagagccacggccatttcctg
ctgacgacatcttacgacaagagcgggaaactgtggtccaaccccgcgtggcacccgctc
cgcactctgtccggacacgacaacaaggtgatgtctggcgacatatcgttcgacaacaaa
tacatagcgacgtgctcctacgaccgcacgtttaaactgtggactccggacctggcctag
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