KEGG   Choristoneura fumiferana (eastern spruce budworm): 141442878
Entry
141442878         CDS       T11020                                 
Symbol
CstF50
Name
(RefSeq) cleavage stimulation factor subunit 1 Cst50
  KO
K14406  cleavage stimulation factor subunit 1
Organism
cfum  Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cfum00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    141442878 (CstF50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cfum03019]
    141442878 (CstF50)
Messenger RNA biogenesis [BR:cfum03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     141442878 (CstF50)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 CSTF1_dimer Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_RFWD3 Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_VPS8 NBCH_WD40 eIF2A Ge1_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_WDR75_2nd Beta-prop_NWD2_C Beta-prop_Vps41 RMC1_N PEP5_VPS11_N Beta-prop_Nup120_160 Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Dicer_dimer
Other DBs
NCBI-GeneID: 141442878
NCBI-ProteinID: XP_073964134
LinkDB
Position
26:2457444..2512932
AA seq 432 aa
MKENNGEIDSKNVVKNRELLYRMIISQLYYDGFQPIAATLAAAVHADPCPPSDRLLNVMM
VGIQHEPDRKDRLAASSGAEHLLGTTGFDLEYEMDASSLAPEPATYETAYVTSHKMACRA
GAFSACGQLVATGSVDASIKILDVERMLAKSAPEEVDPGREQQGHPVIRTLYDHTDEITA
LDFHPREQILVSASRDCCIKLFDITKASAKKAYKSITDAEQVLCVAFHPLGDHIIAATTH
PVIRLYDVTTSQCFVCPVPAHHHQQQVNSIKFSPNGKYFASGSADGCVKLWDTVSNRCFN
TFVNAHDGHEVSSVAFTRNSKYLLTSGLDSSIKLWELSSSRCLIQYTGAGTTGKQEHQAQ
AIFNHTEDYVIFPDEATTSLCTWHSRSASRAQLMSLGHNGAVRHIVHSGTAPAFLTCSDD
YRARFWYRRNTH
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgaaggaaaataatggagaaattgatagcaagaatgtggtcaagaacagggagctactt
taccgcatgattatcagccagctgtattatgatggtttccaacccattgcagctactttg
gcagccgctgttcatgcggatccgtgtccaccaagtgataggttgctgaatgtaatgatg
gtggggatccagcatgagccagatcgcaaggaccgtctagcagcctccagcggggccgag
catctactcgggaccactggctttgacttggagtacgaaatggacgcgtcctctctcgcc
cctgaaccagcgacgtatgagactgcgtacgtgacgtcacacaagatggcgtgccgcgct
ggcgcattcagtgcgtgcgggcagctcgtcgctaccggcagtgtggacgctagcattaag
attttggatgtggagcggatgttggccaagtcggctccggaagaagtggaccctgggagg
gagcagcagggacaccctgtcatcaggacactctacgaccacacggacgaaataacagcg
ctggacttccatcctcgggaacagattctcgtgtccgcttcccgggactgctgcatcaaa
ctcttcgacatcaccaaggctagcgccaagaaggcttataaaagtatcacggacgctgag
caagtgctatgcgtggcattccacccgctgggcgaccacataatagcggccacgacgcac
ccggtgattcgtctgtatgacgtcaccactagccagtgcttcgtgtgccccgtgcccgcg
caccatcatcagcaacaagtcaactccatcaagttttcccctaacggcaagtacttcgcg
agcggcagcgccgacggctgcgtcaagctttgggacaccgtgtccaaccgttgcttcaac
acgtttgtgaacgcgcacgacggacacgaggtcagctcggtggcgttcaccagaaacagc
aagtatcttctaacatcggggctggattcttccattaagctatgggagctctcgagcagc
aggtgtctcatacaatacacgggcgccggaaccactggcaagcaagagcatcaagcgcag
gcgatattcaaccataccgaagactacgtcatatttcccgacgaggcgaccacttcctta
tgcacctggcactctaggagcgcgtcgcgggcgcagctcatgtcgctggggcacaacggc
gctgtgcgacacatcgtgcattcgggcactgcgccggccttcttgacttgcagcgatgac
tacagagcaaggttttggtacaggcgtaatacgcattaa

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