Choristoneura fumiferana (eastern spruce budworm): 141443224
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Entry
141443224 CDS
T11020
Symbol
fra
Name
(RefSeq) LOW QUALITY PROTEIN: neogenin protein frazzled
KO
K06766
neogenin
Organism
cfum Choristoneura fumiferana (eastern spruce budworm)
Pathway
cfum04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
cfum00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
141443224 (fra)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cfum04515
]
141443224 (fra)
Cell adhesion molecules [BR:
cfum04515
]
Immunoglobulin superfamily
DCC/UNC5 family
141443224 (fra)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
Ig_3
I-set
Pur_ac_phosph_N
Ig_2
ig
Neogenin_C
FN3_DSCAM-DSCAML_C
V-set
C2-set_2
Motif
Other DBs
NCBI-GeneID:
141443224
NCBI-ProteinID:
XP_073964535
LinkDB
All DBs
Position
27:2235972..2374339
Genome browser
AA seq
1749 aa
AA seq
DB search
MCRFGIGNWIFLIASAHLFTYVQGLDELIPDEGVRLTAEPHDAVADEGESVLLACAAGRG
ARLAWRHRAGGAPGRDDAVSAGDKYRKQLANGSLLIESMSAELAGHYQCVASGAAGSVVS
RVAIVYLAEVPPLVAGPRSVLGAAGAPALLPCGLAVPPPLALRLMGPGAPPERRVYSAAR
LQSPPPVLKLNVTWLKNGSPVRLEAARVSVTPSGALELDPLREHDAAMYRCRVALSPHKH
STSDEIELRVSAEPGAEEPPRFVATPQPQTVIEGASVTFDCAAVGNPKPEMSWLNNGVAI
DLNDLDSRFYLVGSGSLRVQAARALDAGAYTCRAHSKLDSADTSTTLQVLTAPRVSVGSA
VVKARERGDVTLRCEARGRPAPRVLWLKDGEPLTPNHHDIALVDGSSLRIQGVLRVDAGM
FQCYAWSAGGAAAAALRLVVLPPDDDPPKFPNTTDIFNSLISSEDPTLDPLQYDPDFLGE
TSSAYTSEPDYYDYTLPEGVDLGRENATIVSAPRGLKAVIVKHRFVTLSWQEPEKKMEDI
TEYVVVYRAKGSERERVSRGGASRLEMNVASLQPNTTYQFAARAVTASAISPATETVEVR
TSGEEAHAQPPRDVRVEPLGPHALRVTWTIPALAPAHYTVHYTEVSDPRPARARPLGPHA
LRVTWTRPALAPAHYTVHYTEVSDPRPARAHPLGPHALRVTWTRPALAPAHYTVHYTEVS
DPRPARAHPLGPHALRVTWTRPALAPAHYTVHYTERSVTPPCARAPAGPHALRVTWTRPA
LAPAHYTVHYTEVSDPRPARAHPLGPHALRVTWTRPALAPAHYTVHYTEVESGREQVVTA
PAAAGEGAVTLEGLRAAAAYSVLVAGGGAASPPVRARTLALAPSAPPANVSADPASPTSI
LVRWEAPPARTHRGPLTGYKVRYRAAGARRKPDALATPADARRAELRDLLPHTTYQIRVC
AMNANGSGPFSEWITAATQAQAQARDETRAPAMPPPLNTRAGRDWISVWWEEPVGGGGGV
ARGFRLGWGLGVPDEHARDLPAHTRHHVIRGLESNAEYVISLHASNALGAGPPVYATVRT
RAAAAEGDDPGDEDDDEEDDEEEERPPLIPPVGLKVIMLSGTTAVVYWTDPTLPKGQMAT
DGRRYVVRWAAAGAGGGGPGAGGARRSFNASDLNCMLDDLKPFTTYEFAVKLIKGGQESA
WSMIVSNTTLEAAPASPPRELSAAPAARAADLAWLPPARPNGVITGYIIMYAPMGARAGW
TALTAAGERTRARLERLRPRTLYSVKVQARNSKGLGPFCAPLAFTTGVDTGGGGGLAGAT
SAWLWASAGGACAVLALAAALALSLCCRRAQPLSPHTSTYQKSSASAGIKPPDLWIHHDQ
MELKHLDKSLHSSAGKISAGSVDGPSALASSTLTLTRAPAEYEPARHAPPASLDRRHYVP
TYVDSRRSPSCAGSDETAPLRASPAPAPAPRRCDRCDYRTMTGVGGGGGGGGGLRGHLRA
SRAPPAARAAASRPGLFPEYAAAGGRGAAVAADVAGVAARARASHAAAAPRAPRAPSRAA
PAVRRGRVSAGRGVRGGRGGAGGATPAGGDIYACAARERGHYVAYEPLGHYTHRDSLSSE
AGTVGSLSGTSGAGTGAGTGAGAAAGAGVGSLQRRACAAPLHSFADSPHSTPSHGQGSVR
ETSPYKKSASSSPGHLPNRLQLGGAVAHCAEELEALTPSRSTERLAREMQNLEGLMKDLS
AITQQQFHC
NT seq
5250 nt
NT seq
+upstream
nt +downstream
nt
atgtgtcgatttggtatcgggaactggatttttttgatcgcttcggcacatttgtttaca
tacgttcaaggccttgacgagttaatccccgacgaaggagtgcgactgacggcggagccg
cacgatgcggtcgctgacgagggagagtcggtgctactggcatgtgcagcggggaggggg
gcgcggctggcgtggagacaccgcgcggggggcgcgcccggcagggacgacgcggtgtcg
gcgggggacaagtacaggaaacagctagcgaacgggtcgctgctgatcgaaagcatgtcg
gcggagctggcgggacactaccagtgcgtggcgagcggcgccgcgggcagcgtcgtgtcg
cgcgtcgccatcgtctacttagctgaggtgcccccgttggtggcgggcccgcgcagcgtg
ctgggcgcggcgggcgcgccggcgctgctgccgtgcggcctggccgtgcccccgccgctg
gccctgcgcctgatggggcccggcgcgccgcccgagcggcgggtctactccgccgcccgc
ctgcaaagcccgccgcccgtcctcaaactgaacgtaacgtggctgaagaacgggtctccg
gtgcggctggaggcggcgcgcgtgtcagtgaccccgagcggcgcgctcgagttggacccg
ctgcgggagcacgacgccgccatgtaccgctgccgcgtggcgctgtcgccgcacaagcac
agcacgagcgacgagatcgagctgcgcgtgagcgcggagccgggcgcggaggagccgccg
cggttcgtggccacgccgcagccgcagaccgtcatcgaaggggcgtcggtgacgttcgac
tgcgccgccgtcggcaaccccaagcccgagatgagctggctcaataacggcgtcgccatc
gacctcaacgacctggactcgcgcttctacctggtggggtcggggtcgctgcgcgtgcag
gctgcgcgtgcgctggacgccggcgcctacacgtgccgcgcgcactccaaactcgactcc
gctgacactagcaccacgctgcaagtgctgacggcgccgcgcgtgtcggtgggctcagcg
gtggtgaaggcgcgggagcgaggggacgtgacgctgcggtgcgaggcgcgcgggcggccg
gcgccgcgcgtgctctggctcaaggacggggagccgctcacgcccaaccatcacgacatc
gcgctcgtcgacgggtcgtcgctgcggatccagggcgtgctgcgtgtggacgcgggcatg
ttccagtgctacgcgtggtcggcggggggcgccgccgccgccgcgctgcggctcgtggtg
ctgccgcccgacgacgaccctcccaaattcccaaacacgaccgacattttcaacagcctg
atatcctcagaagacccgaccttagaccctttgcaatacgacccagatttccttggcgag
acctcctccgcttacacttctgagccggactactatgattacacgctgcctgaaggcgtg
gacctggggcgggagaacgcgactatagtctctgcgccgaggggcttaaaggcggttatc
gtgaaacaccgcttcgtcacgctcagttggcaggagcctgagaagaagatggaagatatc
accgaatacgtcgtcgtgtaccgagccaagggcagcgaacgggagcgcgtgtctcgcggc
ggcgcgtcgcgtctggagatgaatgtcgcgtcgctgcagccaaacaccacgtaccagttc
gcggcgcgtgcggtcaccgccagtgccatctcgcccgccacagagaccgtggaggtgcgc
acttcaggcgaagaggcgcacgcgcagccgccgcgggacgtgcgcgtggagccgctgggg
ccgcacgcgctgcgcgtcacgtggaccatacccgcgctcgcgcctgcgcactacaccgtg
cactacacagaggtcagtgacccccgccctgcgcgcgcgcgcccgctggggccgcacgcg
ctgcgcgtcacgtggaccagacccgcgctcgcgcctgcgcactacaccgtgcactataca
gaggtcagtgacccccgccctgcgcgcgcgcacccgctggggccgcacgcgctgcgcgtc
acgtggaccagacccgcgctcgcgcctgcgcactacaccgtgcactatacagaggtcagt
gacccccgccctgcgcgcgcgcacccgctggggccgcacgcgctgcgcgtcacgtggacc
agacccgcgctcgcgcctgcgcactacaccgtgcactatacagagaggtcagtgaccccg
ccctgcgcgcgcgcacccgctgggccgcacgcgctgcgcgtcacgtggaccagacccgcg
ctcgcgcctgcgcactacaccgtgcactacacagaggtcagtgacccccgccctgcgcgc
gcgcacccgctggggccgcacgcgctgcgcgtcacgtggaccagacccgcgctcgcgcct
gcgcactacaccgtgcactacacagaggtagagagcggtcgcgagcaggtggtgacggcg
ccggcggcggctggcgagggcgcggtgacgctggaggggctgcgcgcggcggccgcctac
agcgtgctggtggcggggggcggggcggcctccccccccgtgcgcgcgcgcacgctcgcc
ctcgcgcccagcgcgccgcccgccaacgtcagcgccgaccccgcctcgcccacctcgatc
ctggtccgctgggaggcgccaccggcgcgcacgcaccgcgggccgctgacgggctacaag
gtgcggtaccgggccgctggcgcgcgacgcaagcccgacgcgctcgccacgcccgctgac
gcgcgccgcgcggagctcagggacctgctgccgcataccacctaccagatccgcgtgtgc
gcgatgaacgccaacggctcgggcccgttcagcgagtggatcacggcggccacgcaggcg
caggcgcaggcgcgggacgagacgcgcgcgcccgccatgccgccgccgctcaacacacgc
gcgggccgcgactggatctccgtgtggtgggaggagccggtggggggcggcgggggcgtg
gcgcgcggcttccggctggggtgggggctcggcgtgcccgacgaacacgcgagggacctg
cccgcgcacacgcgacaccacgtcatacgggggctcgagtctaacgcggagtacgtgatc
tctctgcacgcgtcgaacgcgctgggcgcgggcccgcccgtgtacgccaccgtgcgcacg
cgcgccgccgccgcagagggcgacgaccccggggacgaggacgacgacgaggaggacgac
gaggaggaggaacgccctccgctcatcccgcccgtcgggctcaaggtgatcatgctgagt
gggaccaccgctgtagtgtactggacggaccccacgctgcccaagggacagatggcgacg
gacgggcggcgctacgtggtgcggtgggcggcggcgggggcgggggggggcgggccgggg
gcgggcggcgcgcggcgcagctttaacgcgtccgaccttaactgcatgctcgatgacctc
aagcccttcactacctatgagttcgccgtcaagctcatcaaaggcgggcaggagtcggcg
tggtcgatgatagtgtcgaacacgacgctggaggcggcgcccgcgtcccccccccgcgag
ctgagcgccgcccccgccgcgcgcgccgcagacctcgcctggctgccgcccgcccgcccc
aacggggtcatcacaggctacataataatgtacgcgccgatgggggcgagggcggggtgg
acggcgctgacggcggcgggcgagcgcacgcgcgcgcggctcgagcggctgcggccgcgc
accctatacagcgtcaaggtgcaggcgcggaacagcaaggggctcggacccttctgcgcg
ccgctcgccttcaccaccggtgtcgacacgggcgggggcggcgggctggcgggcgccacg
tcggcctggctgtgggcgtcggccggcggcgcctgcgcagtgctggcgctcgctgcggcg
ctcgcgctgtcgctgtgctgtcgccgcgcgcagccgctgtcgccgcacaccagcacgtac
cagaagtcgagtgcgtcggcgggcatcaagccgcccgacctctggatacatcacgaccag
atggagctcaaacatctcgacaagagcctgcacagctccgccggtaagatatcggcaggc
agcgtggacggcccgtcggcgctggcgtcgtcgacgctgacgctgacgcgcgcgccggcc
gagtacgagcccgcgcgacacgcgccgcccgcctccctcgaccgacgacactacgtgccc
acctatgtcgactcgcggcggtcgccatcttgcgcgggcagcgacgagacggcgccgtta
cgcgcgtcgcccgcgcccgcgcccgcgccgcgccgctgcgaccgctgcgactaccggacc
atgacgggcgtgggcggtgggggtgggggtgggggcgggctgcgcggccacctgcgagcg
tcgcgcgcaccgcccgccgcacgcgctgccgcatcccgaccagggttgtttccagagtac
gccgctgctggcgggcgtggcgccgctgtcgccgcagacgtcgctggggtcgctgcacgc
gcacgcgcatcacacgctgccgctgcaccccgcgcaccccgcgcaccctcacgcgccgcc
ccagcagtgcggcgcgggcgggtgtccgctgggcgcggcgtgcgcggggggcgcgggggc
gcggggggcgccacgcccgccggcggggacatctacgcgtgcgcggcgcgcgagcgcgga
cactacgtcgcctacgagccgctggggcactacacgcaccgcgactccctgagtagcgag
gccggaacggtgggcagcctcagcggcacaagcggagcgggcacgggagcggggacagga
gcgggggcggcagcgggcgcgggcgtgggctcgctccaacgccgcgcgtgcgccgcgccg
ctgcacagtttcgcggactcgccgcattccacgcccagccacggacagggcagcgtgcgg
gagacgtctccgtacaagaagagcgcgagttcgtcgcccggacacctgcccaacaggctg
cagctcggcggcgcggtggcgcactgcgcggaggagctggaggcgctgacgccgtcccgc
tctaccgagcggttggcgagagagatgcagaatctagaggggctcatgaaagacctctcc
gccatcacgcagcagcagttccactgctag
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